BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:21.8 nTPM
HPA:21.8 nTPM
GTEx:8.2 nTPM
FANTOM5:0.0 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody CAB026037Antibody CAB079997
Glial cells MediumLow
Neuronal cells HighLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.8
2289 Male, age 61, right hemisphere 10.2
1781 Male, age 74, unknown 9.5
1854 Male, age 80, left hemisphere 8.5
2481 Female, age 94, left hemisphere 8.5
2288 Male, age 75, left hemisphere 8.1
2846 Female, age 79, unknown 7.2
2290 Female, age 72, unknown 6.1
1857 Female, age 85, left hemisphere 4.0
Claustrum
nTPM: 13.5
2292 Female, age 85, both hemispheres 27.9
1956 Male, age 74, unknown 17.1
2645 Female, age 72, unknown 13.2
2284 Female, age 91, both hemispheres 12.1
2392 Female, age 94, both hemispheres 11.3
2198 Male, age 80, both hemispheres 11.0
2491 Male, age 75, both hemispheres 9.9
2568 Male, age 61, both hemispheres 9.6
2196 Female, age 79, unknown 9.2
Globus pallidus, externus
nTPM: 21.8
2567 Female, age 72, unknown 32.5
2646 Male, age 61, right hemisphere 21.5
1996 Male, age 80, right hemisphere 19.0
2772 Female, age 79, unknown 18.3
2395 Male, age 75, both hemispheres 17.5
Globus pallidus, internus
nTPM: 19.1
2566 Female, age 72, unknown 27.9
2111 Female, age 85, right hemisphere 27.3
2778 Female, age 91, both hemispheres 19.3
2037 Male, age 80, right hemisphere 17.2
1818 Male, age 74, unknown 15.1
2483 Female, age 94, right hemisphere 13.5
2287 Male, age 75, right hemisphere 13.4
Nucleus accumbens
nTPM: 9.5
2391 Female, age 94, left hemisphere 15.9
2732 Male, age 80, right hemisphere 15.6
2698 Female, age 72, unknown 11.9
2824 Male, age 61, right hemisphere 7.6
1806 Female, age 85, left hemisphere 7.2
2286 Male, age 75, left hemisphere 7.2
1783 Male, age 74, unknown 6.7
1856 Female, age 91, right hemisphere 3.7
Nucleus basalis of Meynert
nTPM: 12.8
2569 Male, age 61, both hemispheres 19.5
2393 Male, age 80, right hemisphere 11.8
2484 Female, age 94, left hemisphere 10.2
2821 Male, age 75, both hemispheres 9.8
Nucleus of the diagonal band
nTPM: 3.7
1979 Male, age 74, unknown 6.7
2029 Male, age 61, right hemisphere 3.8
2195 Female, age 85, both hemispheres 3.5
2775 Male, age 80, right hemisphere 2.9
1812 Female, age 91, both hemispheres 1.8
Olfactory tubercle
nTPM: 4.8
2487 Female, age 94, left hemisphere 5.5
2856 Male, age 75, right hemisphere 5.5
1998 Female, age 91, both hemispheres 5.0
1846 Male, age 80, right hemisphere 3.0
Putamen
nTPM: 10.6
2489 Female, age 72, unknown 15.6
1829 Male, age 74, unknown 13.3
2647 Male, age 75, left hemisphere 12.3
2482 Female, age 94, left hemisphere 11.4
2466 Female, age 79, unknown 7.9
1937 Female, age 91, right hemisphere 7.6
1838 Male, age 80, right hemisphere 6.1
Septal nuclei
nTPM: 6.3
2394 Male, age 61, left hemisphere 13.1
2199 Male, age 80, right hemisphere 8.9
2059 Female, age 85, both hemispheres 7.9
2629 Female, age 94, right hemisphere 5.4
1960 Male, age 74, unknown 3.8
2009 Female, age 91, both hemispheres 3.0
2031 Female, age 72, unknown 2.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.0
Samples: 246

Max nTPM: 20.8
Min nTPM: 0.4
Std nTPM: 3.0
Median nTPM: 4.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 20.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 17.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 16.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 14.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 13.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 12.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 12.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 11.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 11.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 11.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 10.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.6
Samples: 246

Max nTPM: 18.6
Min nTPM: 0.4
Std nTPM: 2.7
Median nTPM: 2.8
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 18.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 15.7
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 15.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 14.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 13.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 11.1
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 10.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 10.7
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 10.5
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 9.8
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 9.4
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Brain - Putamen (basal ganglia)
Average nTPM: 8.2
Samples: 205

Max nTPM: 31.4
Min nTPM: 1.0
Std nTPM: 5.1
Median nTPM: 6.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 31.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 28.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 27.4
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 26.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 23.4
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 22.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 22.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 22.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 21.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 20.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 18.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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