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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:84.4 nTPM
HPA:84.4 nTPM
FANTOM5:146.8 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 84.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 75.5
2188 Female, age 91, both hemispheres 80.5
2301 Female, age 85, both hemispheres 78.3
2090 Male, age 80, both hemispheres 76.2
1984 Male, age 76, both hemispheres 67.1
Dorsal cochlear nucleus
nTPM: 74.8
2058 Male, age 76, both hemispheres 79.8
2187 Female, age 91, both hemispheres 76.9
2370 Male, age 61, both hemispheres 75.5
2802 Male, age 74, right hemisphere 74.2
2378 Male, age 80, both hemispheres 67.6
Dorsal tegmental nucleus
nTPM: 69.3
2083 Male, age 80, both hemispheres 77.9
2326 Male, age 74, both hemispheres 69.2
1936 Male, age 76, left hemisphere 69.1
2358 Male, age 61, both hemispheres 60.8
Dorsolateral tegmental area
nTPM: 69.0
2751 Female, age 85, both hemispheres 78.5
2654 Male, age 80, both hemispheres 73.5
2337 Male, age 61, both hemispheres 71.4
2141 Male, age 76, both hemispheres 63.3
2360 Male, age 74, both hemispheres 58.4
Kolliker-Fuse nucleus
nTPM: 73.7
2793 Female, age 91, left hemisphere 86.9
2163 Male, age 80, both hemispheres 67.8
2315 Male, age 76, right hemisphere 66.4
Lateral lemniscal nuclei
nTPM: 73.6
2320 Female, age 91, left hemisphere 84.1
2746 Female, age 85, left hemisphere 76.4
2036 Male, age 80, both hemispheres 76.0
2453 Male, age 74, right hemisphere 68.6
2169 Male, age 76, both hemispheres 63.0
Lateral parabrachial nucleus
nTPM: 79.7
2790 Male, age 61, both hemispheres 94.1
2792 Male, age 76, both hemispheres 85.2
2013 Male, age 80, both hemispheres 74.5
2139 Female, age 85, right hemisphere 65.1
Lateral vestibular nucleus
nTPM: 75.1
2184 Male, age 76, both hemispheres 78.9
2311 Male, age 80, both hemispheres 71.4
Locus coeruleus
nTPM: 60.4
2317 Female, age 72, unknown 66.6
2162 Male, age 80, both hemispheres 63.0
1980 Male, age 76, both hemispheres 62.9
2720 Male, age 74, both hemispheres 61.7
2014 Male, age 55, unknown 59.5
2123 Female, age 91, both hemispheres 57.0
2788 Male, age 74, unknown 52.1
Medial olivary nucleus
nTPM: 84.4
1943 Male, age 61, both hemispheres 96.1
1962 Male, age 76, both hemispheres 81.9
2138 Female, age 91, both hemispheres 80.3
2851 Male, age 80, both hemispheres 79.5
Medial parabrachial nucleus
nTPM: 80.2
2156 Male, age 61, both hemispheres 94.1
2463 Female, age 85, right hemisphere 83.8
2170 Female, age 91, both hemispheres 78.8
2786 Male, age 76, both hemispheres 77.4
2854 Male, age 80, both hemispheres 67.1
Medial periolivary nuclei
nTPM: 69.6
2081 Male, age 80, both hemispheres 84.9
2458 Female, age 91, both hemispheres 77.2
2791 Male, age 74, right hemisphere 65.6
2063 Male, age 76, both hemispheres 62.2
2171 Female, age 85, both hemispheres 57.9
Motor facial nucleus
nTPM: 70.8
2126 Male, age 61, both hemispheres 87.5
2795 Female, age 91, both hemispheres 71.4
2697 Female, age 85, both hemispheres 70.2
2327 Male, age 80, both hemispheres 68.7
2365 Male, age 74, right hemisphere 65.4
2062 Male, age 76, both hemispheres 61.5
Motor trigeminal nucleus
nTPM: 76.0
2321 Female, age 91, both hemispheres 79.6
2309 Male, age 76, both hemispheres 77.7
2560 Male, age 74, both hemispheres 75.9
2335 Male, age 61, both hemispheres 74.2
2079 Male, age 80, both hemispheres 72.3
Nuclei of the trapezoid body
nTPM: 66.1
2166 Male, age 80, both hemispheres 76.7
2368 Female, age 91, both hemispheres 72.2
1983 Male, age 76, both hemispheres 63.0
2159 Male, age 61, both hemispheres 60.8
2735 Female, age 85, both hemispheres 57.7
Paramedian reticular nucleus
nTPM: 68.9
2057 Male, age 80, both hemispheres 72.7
2313 Male, age 61, both hemispheres 71.3
2052 Male, age 76, both hemispheres 68.6
2050 Female, age 85, both hemispheres 63.1
Pontine nuclei
nTPM: 73.4
2115 Male, age 80, left hemisphere 84.6
2319 Female, age 91, both hemispheres 80.0
2454 Male, age 74, left hemisphere 77.4
1968 Male, age 76, left hemisphere 75.9
2109 Female, age 72, unknown 72.7
1863 Male, age 55, unknown 67.4
2787 Female, age 85, both hemispheres 67.4
2727 Male, age 61, right hemisphere 61.8
Pontine raphe nucleus
nTPM: 62.1
2122 Female, age 85, midline 62.3
2853 Male, age 76, midline 61.8
Posteroventral cochlear nucleus
nTPM: 74.5
2135 Female, age 91, both hemispheres 86.9
2341 Male, age 80, both hemispheres 81.8
2070 Male, age 76, both hemispheres 71.3
2371 Male, age 61, both hemispheres 71.0
2752 Female, age 85, both hemispheres 61.6
Principal sensory trigeminal nucleus
nTPM: 68.7
2367 Female, age 91, left hemisphere 80.9
2324 Male, age 76, both hemispheres 74.7
2008 Male, age 80, left hemisphere 62.9
2158 Male, age 61, both hemispheres 56.3
Reticular pontine nucleus, caudal
nTPM: 76.8
2457 Female, age 91, both hemispheres 83.0
2559 Male, age 74, both hemispheres 78.6
2332 Male, age 80, right hemisphere 74.4
2092 Male, age 76, both hemispheres 71.3
Reticular pontine nucleus, oral
nTPM: 72.8
2366 Female, age 91, both hemispheres 80.5
2167 Male, age 76, both hemispheres 76.2
1939 Male, age 80, both hemispheres 73.5
2012 Female, age 85, both hemispheres 68.2
2361 Male, age 74, both hemispheres 65.5
Reticulotegmental nucleus
nTPM: 72.9
2322 Female, age 91, both hemispheres 78.5
2333 Male, age 80, both hemispheres 74.9
2452 Male, age 74, both hemispheres 73.5
2325 Male, age 76, both hemispheres 64.9
Spinal trigeminal nucleus, oral
nTPM: 67.3
2164 Male, age 80, both hemispheres 70.6
1978 Male, age 76, both hemispheres 70.0
2737 Female, age 85, both hemispheres 61.4
Subcoeruleus area
nTPM: 70.5
2369 Female, age 85, left hemisphere 81.2
2089 Male, age 76, left hemisphere 76.8
2451 Male, age 74, both hemispheres 68.7
1958 Male, age 80, both hemispheres 63.1
2323 Female, age 91, left hemisphere 62.8
Superior olive
nTPM: 70.1
2329 Male, age 80, right hemisphere 77.6
2561 Female, age 91, both hemispheres 75.6
2020 Male, age 76, both hemispheres 73.3
2364 Male, age 74, right hemisphere 63.5
1875 Female, age 85, both hemispheres 60.6
Superior vestibular nucleus
nTPM: 67.2
2061 Male, age 76, both hemispheres 78.6
2015 Male, age 80, both hemispheres 66.2
2383 Male, age 74, both hemispheres 56.8
Ventral periolivary nuclei
nTPM: 66.2
2023 Male, age 76, both hemispheres 74.3
2165 Male, age 80, both hemispheres 69.1
2794 Female, age 91, left hemisphere 64.1
2130 Female, age 85, both hemispheres 57.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 72.7
2456 Female, age 91, both hemispheres 81.0
2161 Male, age 80, both hemispheres 75.1
2359 Male, age 61, both hemispheres 74.3
2840 Female, age 85, both hemispheres 71.0
2449 Male, age 74, both hemispheres 67.7
1959 Male, age 76, both hemispheres 67.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 146.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 146.8
FF:10165-103B3 76 years, female 149.7
FF:10182-103D2 60 years, female 143.8
Pons
Scaled Tags Per Million: 77.0
FF:10033-101E6 18-54 years, mixed 77.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.