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TISSUE PRIMARY DATA PONS AND MEDULLA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:133.4 nTPM
HPA:133.4 nTPM
FANTOM5:56.4 Scaled Tags Per Million
Pig:20.0 nTPM

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 133.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 119.8
1984 Male, age 76, both hemispheres 125.9
2090 Male, age 80, both hemispheres 119.1
2188 Female, age 91, both hemispheres 117.1
2301 Female, age 85, both hemispheres 116.9
Area postrema
nTPM: 133.4
2799 Male, age 61, both hemispheres 154.7
2306 Male, age 80, both hemispheres 124.3
2054 Male, age 76, both hemispheres 121.1
Cuneate nuclei
nTPM: 122.2
2381 Male, age 80, both hemispheres 123.2
2131 Male, age 76, both hemispheres 122.3
2376 Male, age 61, both hemispheres 121.0
Dorsal cochlear nucleus
nTPM: 125.2
2370 Male, age 61, both hemispheres 129.8
2802 Male, age 74, right hemisphere 127.5
2378 Male, age 80, both hemispheres 123.9
2187 Female, age 91, both hemispheres 122.5
2058 Male, age 76, both hemispheres 122.4
Dorsal medullary reticular nucleus
nTPM: 125.7
2373 Male, age 61, both hemispheres 130.8
2040 Female, age 85, both hemispheres 123.2
2088 Male, age 76, both hemispheres 123.2
Dorsal motor vagal complex
nTPM: 131.0
2797 Male, age 61, both hemispheres 146.4
2643 Male, age 74, both hemispheres 139.6
2844 Male, age 55, unknown 135.3
2133 Female, age 91, both hemispheres 132.2
2807 Female, age 85, both hemispheres 125.6
2813 Female, age 72, unknown 125.3
2000 Male, age 74, unknown 123.9
2185 Male, age 76, both hemispheres 119.5
Dorsal tegmental nucleus
nTPM: 124.5
2358 Male, age 61, both hemispheres 127.7
2083 Male, age 80, both hemispheres 125.1
2326 Male, age 74, both hemispheres 123.5
1936 Male, age 76, left hemisphere 121.8
Dorsolateral tegmental area
nTPM: 121.7
2141 Male, age 76, both hemispheres 125.1
2654 Male, age 80, both hemispheres 124.3
2360 Male, age 74, both hemispheres 120.7
2751 Female, age 85, both hemispheres 120.5
2337 Male, age 61, both hemispheres 118.0
Gigantocellular reticular nuclei, medullary
nTPM: 125.8
2022 Male, age 76, right hemisphere 129.4
2314 Male, age 61, both hemispheres 129.1
2462 Male, age 74, both hemispheres 126.1
2387 Female, age 91, both hemispheres 125.6
2310 Male, age 80, both hemispheres 122.8
1876 Female, age 85, both hemispheres 122.1
Gigantocellular reticular nuclei, pars
nTPM: 125.2
2084 Female, age 85, both hemispheres 127.5
2336 Male, age 61, both hemispheres 127.3
2168 Male, age 76, both hemispheres 126.9
2706 Male, age 80, both hemispheres 122.7
2330 Male, age 80, both hemispheres 121.8
Inferior olive
nTPM: 129.3
2085 Female, age 85, both hemispheres 132.8
2178 Male, age 61, both hemispheres 130.9
2379 Male, age 80, both hemispheres 130.3
2628 Female, age 91, both hemispheres 128.7
2563 Male, age 74, both hemispheres 123.9
Kolliker-Fuse nucleus
nTPM: 121.4
2163 Male, age 80, both hemispheres 124.4
2793 Female, age 91, left hemisphere 121.9
2315 Male, age 76, right hemisphere 117.7
Lateral lemniscal nuclei
nTPM: 121.3
2169 Male, age 76, both hemispheres 124.8
2453 Male, age 74, right hemisphere 121.1
2036 Male, age 80, both hemispheres 121.0
2320 Female, age 91, left hemisphere 120.2
2746 Female, age 85, left hemisphere 119.2
Lateral medullary reticular nucleus
nTPM: 124.5
2804 Female, age 91, both hemispheres 131.9
2374 Male, age 61, both hemispheres 131.7
2190 Female, age 85, both hemispheres 125.7
2044 Male, age 76, both hemispheres 121.5
2852 Male, age 80, both hemispheres 120.7
2305 Male, age 74, both hemispheres 115.7
Lateral parabrachial nucleus
nTPM: 121.4
2790 Male, age 61, both hemispheres 128.0
2139 Female, age 85, right hemisphere 123.3
2013 Male, age 80, both hemispheres 118.8
2792 Male, age 76, both hemispheres 115.7
Lateral vestibular nucleus
nTPM: 123.9
2184 Male, age 76, both hemispheres 124.6
2311 Male, age 80, both hemispheres 123.1
Locus coeruleus
nTPM: 128.3
2720 Male, age 74, both hemispheres 131.0
2317 Female, age 72, unknown 130.4
2014 Male, age 55, unknown 129.1
2123 Female, age 91, both hemispheres 128.5
2162 Male, age 80, both hemispheres 127.9
2788 Male, age 74, unknown 127.0
1980 Male, age 76, both hemispheres 124.3
Medial olivary nucleus
nTPM: 119.4
2138 Female, age 91, both hemispheres 124.4
1943 Male, age 61, both hemispheres 121.0
2851 Male, age 80, both hemispheres 119.3
1962 Male, age 76, both hemispheres 112.9
Medial parabrachial nucleus
nTPM: 123.8
2156 Male, age 61, both hemispheres 130.8
2786 Male, age 76, both hemispheres 124.1
2463 Female, age 85, right hemisphere 124.0
2170 Female, age 91, both hemispheres 121.0
2854 Male, age 80, both hemispheres 119.4
Medial periolivary nuclei
nTPM: 122.4
2063 Male, age 76, both hemispheres 130.3
2171 Female, age 85, both hemispheres 123.9
2458 Female, age 91, both hemispheres 121.3
2791 Male, age 74, right hemisphere 119.1
2081 Male, age 80, both hemispheres 117.7
Medial vestibular nucleus
nTPM: 122.6
2624 Male, age 61, both hemispheres 124.7
2803 Female, age 91, both hemispheres 124.0
2093 Male, age 80, both hemispheres 122.5
2743 Female, age 85, both hemispheres 122.1
2134 Male, age 76, both hemispheres 122.0
2801 Male, age 74, both hemispheres 120.1
Motor facial nucleus
nTPM: 124.3
2062 Male, age 76, both hemispheres 133.5
2795 Female, age 91, both hemispheres 132.1
2126 Male, age 61, both hemispheres 121.4
2327 Male, age 80, both hemispheres 121.4
2365 Male, age 74, right hemisphere 118.8
2697 Female, age 85, both hemispheres 118.6
Motor hypoglossal nucleus
nTPM: 125.1
2461 Male, age 61, both hemispheres 127.5
2277 Male, age 76, both hemispheres 124.9
2125 Female, age 91, both hemispheres 124.5
2132 Female, age 85, both hemispheres 124.5
2182 Male, age 80, both hemispheres 124.0
Motor trigeminal nucleus
nTPM: 123.5
2309 Male, age 76, both hemispheres 128.0
2335 Male, age 61, both hemispheres 126.7
2560 Male, age 74, both hemispheres 123.3
2321 Female, age 91, both hemispheres 122.1
2079 Male, age 80, both hemispheres 117.6
Nuclei of the trapezoid body
nTPM: 123.6
1983 Male, age 76, both hemispheres 128.6
2368 Female, age 91, both hemispheres 126.0
2735 Female, age 85, both hemispheres 125.2
2166 Male, age 80, both hemispheres 120.4
2159 Male, age 61, both hemispheres 117.7
Nucleus ambiguus
nTPM: 126.9
2096 Female, age 85, both hemispheres 134.9
2071 Male, age 76, both hemispheres 118.9
Nucleus cuneatus
nTPM: 125.6
2805 Female, age 91, both hemispheres 134.0
2562 Male, age 61, both hemispheres 131.6
2564 Male, age 74, both hemispheres 127.1
2380 Male, age 80, both hemispheres 120.7
2808 Female, age 85, both hemispheres 120.4
2100 Male, age 76, both hemispheres 119.7
Nucleus gracilis
nTPM: 122.7
2299 Female, age 85, both hemispheres 125.8
2382 Male, age 80, both hemispheres 121.3
2627 Male, age 74, both hemispheres 121.1
Nucleus raphe magnus
nTPM: 121.8
2172 Female, age 85, both hemispheres 125.3
2328 Male, age 80, both hemispheres 123.5
2051 Male, age 76, both hemispheres 122.5
2459 Female, age 91, both hemispheres 120.6
2455 Male, age 74, both hemispheres 120.0
2160 Male, age 61, both hemispheres 118.6
Nucleus raphe obscurus
nTPM: 119.5
2800 Male, age 61, midline 125.6
2845 Female, age 85, midline 120.4
2142 Male, age 76, midline 112.6
Nucleus raphe pallidus
nTPM: 120.2
1924 Male, age 61, midline 121.4
2183 Male, age 80, midline 120.1
2145 Male, age 76, midline 119.1
Nucleus tractus solitarii
nTPM: 125.1
2307 Male, age 80, both hemispheres 128.0
2191 Female, age 85, both hemispheres 126.3
2656 Male, age 76, both hemispheres 125.8
2144 Female, age 91, right hemisphere 120.4
Paramedian reticular nucleus
nTPM: 121.0
2313 Male, age 61, both hemispheres 128.1
2057 Male, age 80, both hemispheres 122.5
2050 Female, age 85, both hemispheres 118.8
2052 Male, age 76, both hemispheres 114.6
Parvicellular reticular nuclei
nTPM: 119.8
2558 Male, age 74, both hemispheres 122.3
2095 Male, age 76, both hemispheres 119.2
2119 Male, age 80, both hemispheres 117.9
Parvicellular reticular nuclei, medullary
nTPM: 126.9
2181 Male, age 80, left hemisphere 129.2
2091 Female, age 85, both hemispheres 126.0
2189 Female, age 91, both hemispheres 125.5
Peritrigeminal nucleus
nTPM: 121.6
2179 Male, age 61, both hemispheres 122.9
2067 Female, age 85, both hemispheres 122.8
2136 Male, age 76, both hemispheres 119.2
Pontine nuclei
nTPM: 120.6
1968 Male, age 76, left hemisphere 129.1
2787 Female, age 85, both hemispheres 124.0
1863 Male, age 55, unknown 123.6
2109 Female, age 72, unknown 121.4
2115 Male, age 80, left hemisphere 119.7
2319 Female, age 91, both hemispheres 116.6
2727 Male, age 61, right hemisphere 115.2
2454 Male, age 74, left hemisphere 114.8
Pontine raphe nucleus
nTPM: 127.5
2853 Male, age 76, midline 131.8
2122 Female, age 85, midline 123.2
Posteroventral cochlear nucleus
nTPM: 121.7
2371 Male, age 61, both hemispheres 129.9
2752 Female, age 85, both hemispheres 125.0
2070 Male, age 76, both hemispheres 123.9
2341 Male, age 80, both hemispheres 116.2
2135 Female, age 91, both hemispheres 113.5
Prepositus hypoglossal nucleus
nTPM: 121.9
2086 Male, age 80, both hemispheres 124.1
2855 Female, age 85, right hemisphere 119.6
Principal sensory trigeminal nucleus
nTPM: 120.7
2324 Male, age 76, both hemispheres 123.1
2158 Male, age 61, both hemispheres 121.8
2008 Male, age 80, left hemisphere 120.7
2367 Female, age 91, left hemisphere 117.1
Reticular pontine nucleus, caudal
nTPM: 122.4
2092 Male, age 76, both hemispheres 124.5
2457 Female, age 91, both hemispheres 123.1
2332 Male, age 80, right hemisphere 121.7
2559 Male, age 74, both hemispheres 120.3
Reticular pontine nucleus, oral
nTPM: 120.3
2167 Male, age 76, both hemispheres 126.1
1939 Male, age 80, both hemispheres 120.9
2366 Female, age 91, both hemispheres 119.1
2012 Female, age 85, both hemispheres 119.0
2361 Male, age 74, both hemispheres 116.2
Reticulotegmental nucleus
nTPM: 123.6
2325 Male, age 76, both hemispheres 125.3
2452 Male, age 74, both hemispheres 124.0
2322 Female, age 91, both hemispheres 123.7
2333 Male, age 80, both hemispheres 121.5
Spinal trigeminal nucleus, caudal
nTPM: 125.1
2642 Male, age 74, both hemispheres 128.4
2308 Male, age 80, both hemispheres 125.2
2447 Male, age 76, both hemispheres 125.1
2390 Female, age 91, both hemispheres 124.8
2312 Male, age 61, both hemispheres 121.8
Spinal trigeminal nucleus, interpolar
nTPM: 124.9
2625 Male, age 61, both hemispheres 128.1
2033 Male, age 80, both hemispheres 125.2
2389 Female, age 91, both hemispheres 124.3
2386 Female, age 85, both hemispheres 124.2
2066 Male, age 76, right hemisphere 122.9
Spinal trigeminal nucleus, oral
nTPM: 126.7
1978 Male, age 76, both hemispheres 134.7
2164 Male, age 80, both hemispheres 122.9
2737 Female, age 85, both hemispheres 122.4
Spinal vestibular nucleus
nTPM: 125.2
2384 Male, age 74, both hemispheres 127.6
2796 Male, age 61, both hemispheres 126.6
2780 Male, age 80, both hemispheres 125.9
2186 Female, age 91, both hemispheres 124.4
2748 Male, age 76, both hemispheres 123.2
2806 Female, age 85, both hemispheres 123.2
Subcoeruleus area
nTPM: 125.4
2451 Male, age 74, both hemispheres 132.6
2323 Female, age 91, left hemisphere 127.2
2089 Male, age 76, left hemisphere 124.9
1958 Male, age 80, both hemispheres 122.8
2369 Female, age 85, left hemisphere 119.3
Superior olive
nTPM: 121.1
2561 Female, age 91, both hemispheres 123.9
2020 Male, age 76, both hemispheres 121.4
2329 Male, age 80, right hemisphere 121.3
1875 Female, age 85, both hemispheres 121.1
2364 Male, age 74, right hemisphere 117.7
Superior vestibular nucleus
nTPM: 120.8
2015 Male, age 80, both hemispheres 121.9
2061 Male, age 76, both hemispheres 121.6
2383 Male, age 74, both hemispheres 119.0
Ventral medullary reticular nucleus
nTPM: 130.8
2372 Male, age 61, both hemispheres 132.7
2060 Male, age 76, both hemispheres 128.9
Ventral periolivary nuclei
nTPM: 121.6
2165 Male, age 80, both hemispheres 123.3
2794 Female, age 91, left hemisphere 121.7
2023 Male, age 76, both hemispheres 121.0
2130 Female, age 85, both hemispheres 120.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 124.9
2302 Female, age 91, both hemispheres 130.3
2180 Male, age 61, both hemispheres 126.7
2741 Female, age 85, both hemispheres 122.9
2118 Male, age 80, both hemispheres 122.6
1986 Male, age 76, both hemispheres 122.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 122.5
2456 Female, age 91, both hemispheres 126.2
2359 Male, age 61, both hemispheres 125.6
1959 Male, age 76, both hemispheres 123.0
2161 Male, age 80, both hemispheres 122.0
2449 Male, age 74, both hemispheres 120.1
2840 Female, age 85, both hemispheres 118.0

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 56.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 56.4
FF:10165-103B3 76 years, female 56.5
FF:10182-103D2 60 years, female 56.4
Medulla oblongata
Scaled Tags Per Million: 36.5
FF:10038-101F2 18-64 years, mixed 41.7
FF:10155-103A2 76 years, female 41.0
FF:10174-103C3 60 years, female 26.7
Pons
Scaled Tags Per Million: 40.2
FF:10033-101E6 18-54 years, mixed 40.2

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 20.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 13.9
Samples: 4

Max nTPM: 15.0
Min nTPM: 12.7
Sample A Female 13.5
Sample B Female 15.0
Sample C Male 14.3
Sample D Male 12.7
Pons
nTPM: 20.0
Samples: 4

Max nTPM: 29.4
Min nTPM: 15.2
Sample A Female 29.4
Sample B Female 17.0
Sample C Male 18.4
Sample D Male 15.2

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