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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:75.0 nTPM
HPA:75.0 nTPM
GTEx:129.9 nTPM
FANTOM5:53.1 Scaled Tags Per Million
Pig:76.8 nTPM
Mouse:255.5 nTPM
Allen mouse:11.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 75.0
Sample id Sample description nTPM
Amygdala
nTPM: 53.2
2814 Male, age 76, right hemisphere 85.0
2517 Female, age 94, left hemisphere 50.7
1987 Female, age 91, left hemisphere 48.6
2514 Male, age 75, right hemisphere 44.3
2695 Female, age 67, right hemisphere 37.6
Basal amygdala
nTPM: 72.7
2827 Female, age 67, right hemisphere 93.9
2243 Female, age 91, right hemisphere 92.7
2685 Female, age 94, left hemisphere 86.0
1955 Male, age 76, both hemispheres 61.4
2110 Male, age 80, left hemisphere 53.3
2609 Male, age 75, right hemisphere 48.6
Central amygdala
nTPM: 70.5
2826 Female, age 94, left hemisphere 93.7
1905 Male, age 76, both hemispheres 75.7
2239 Male, age 80, left hemisphere 75.5
2701 Female, age 91, right hemisphere 59.9
2515 Male, age 75, right hemisphere 47.8
Corticomedial amygdala
nTPM: 65.2
2535 Female, age 67, right hemisphere 95.8
2429 Female, age 94, left hemisphere 79.1
2829 Male, age 80, left hemisphere 64.2
2242 Female, age 91, right hemisphere 61.6
2240 Male, age 76, both hemispheres 48.3
2428 Male, age 75, right hemisphere 42.0
Lateral amygdala
nTPM: 71.9
2534 Female, age 94, left hemisphere 95.2
1883 Male, age 76, both hemispheres 80.4
2255 Female, age 91, right hemisphere 71.2
2256 Male, age 80, left hemisphere 70.8
2830 Female, age 67, right hemisphere 66.0
2516 Male, age 75, right hemisphere 47.8
Stria terminalis, bed nucleus
nTPM: 75.0
2486 Female, age 94, both hemispheres 92.4
1974 Female, age 91, both hemispheres 82.2
2201 Male, age 74, unknown 50.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 129.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 129.9
Samples: 152

Max nTPM: 265.8
Min nTPM: 17.0
Std nTPM: 43.4
Median nTPM: 128.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 265.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 258.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 244.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 223.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 216.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 206.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 200.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 195.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 193.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 192.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 190.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 188.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 187.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 186.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 183.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 183.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 182.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 181.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 181.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 178.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 176.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 173.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 173.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 173.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 172.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 170.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 168.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 167.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 167.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 167.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 166.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 163.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 163.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 161.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 161.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 160.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 160.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 159.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 159.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 158.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 158.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 157.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 156.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 154.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 152.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 152.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 151.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 150.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 150.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 150.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 150.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 149.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 148.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 146.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 146.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 145.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 144.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 144.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 143.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 141.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 141.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 140.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 138.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 138.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 137.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 134.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 134.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 133.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 132.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 132.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 131.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 131.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 131.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 130.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 129.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 129.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 127.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 126.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 124.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 124.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 124.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 123.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 123.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 120.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 120.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 120.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 119.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 119.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 118.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 117.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 116.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 115.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 113.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 112.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 112.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 112.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 111.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 110.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 110.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 110.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 110.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 110.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 108.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 107.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 106.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 106.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 106.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 105.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 105.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 103.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 103.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 102.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 101.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 100.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 99.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 98.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 98.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 97.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 96.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 96.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 96.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 95.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 92.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 92.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 89.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 88.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 87.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 87.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 85.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 81.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 80.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 79.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 78.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 78.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 77.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 76.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 72.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 72.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 71.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 70.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 70.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 66.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 63.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 60.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 59.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 59.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 58.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 50.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 32.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 17.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 53.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 53.1
FF:10151-102I7 76 years, female 53.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.8
Pig sample Sample description nTPM
Amygdala
nTPM: 76.8
Samples: 4

Max nTPM: 88.6
Min nTPM: 65.3
Sample A Female 88.6
Sample B Female 65.3
Sample C Male 84.7
Sample D Male 68.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 255.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 255.5
Samples: 4

Max nTPM: 316.8
Min nTPM: 219.5
Sample A Male 219.5
Sample B Male 251.9
Sample C Female 316.8
Sample D Female 233.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.3
100144096 Antisense, RP_110407_03_B09, Mouse strain C57BL/6J (56 days, male) 11.3

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