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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:81.1 nTPM
HPA:81.1 nTPM
GTEx:76.0 nTPM
FANTOM5:93.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA028200
Glandular cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 81.1
overview
Male, age 65
Small intestine sample 232
nTPM: 81.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 103.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 64.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 75.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 76.0
Samples: 187

Max nTPM: 244.9
Min nTPM: 23.8
Std nTPM: 35.3
Median nTPM: 66.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 244.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 199.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 176.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 170.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 167.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 159.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 151.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 151.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 148.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 146.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 145.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 144.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 141.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 138.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 137.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 133.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 129.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 128.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 121.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 120.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 119.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 118.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 116.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 112.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 111.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 111.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 111.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 111.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 110.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 109.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 109.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 107.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 106.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 104.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 104.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 103.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 102.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 101.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 100.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 99.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 98.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 97.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 97.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 97.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 96.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 93.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 92.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 92.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 91.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 91.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 91.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 90.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 89.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 87.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 86.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 85.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 85.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 85.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 85.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 85.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 83.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 82.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 82.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 81.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 79.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 79.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 78.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 78.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 78.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 76.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 76.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 76.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 74.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 74.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 73.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 73.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 72.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 72.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 72.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 71.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 71.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 71.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 71.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 70.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 70.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 70.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 69.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 69.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 67.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 66.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 66.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 66.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 66.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 66.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 65.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 65.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 65.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 65.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 65.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 64.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 63.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 63.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 63.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 63.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 62.9
GTEX-1192X-2526-SM-59868 50-59 years, male 62.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 62.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 62.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 62.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 61.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 61.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 61.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 61.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 60.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 60.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 58.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 58.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 58.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 57.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 57.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 57.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 57.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 57.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 57.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 56.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 55.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 54.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 54.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 54.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 54.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 53.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 52.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 52.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 52.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 52.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 52.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 52.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 51.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 51.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 50.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 50.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 49.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 49.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 49.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 48.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 48.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 48.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 48.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 48.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 47.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 46.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 46.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 46.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 46.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 46.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 45.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 45.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 45.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 45.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 45.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 44.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 44.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 44.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 43.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 43.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 43.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 43.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 42.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 42.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 42.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 39.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 39.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 38.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 38.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 38.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 37.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 37.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 35.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 35.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 35.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 33.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 33.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 32.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 32.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 31.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 28.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 23.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 93.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 93.9
FF:10024-101D6 15,40,85 years, mixed 93.9

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