BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:40.7 nTPM
HPA:40.7 nTPM
GTEx:32.9 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:26.1 nTPM
Mouse:98.4 nTPM
Allen mouse:9.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA028510Antibody HPA029922Antibody HPA029923
Glial cells LowLowNot detected
Neuronal cells HighNot detectedNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 25.6
2289 Male, age 61, right hemisphere 36.7
1781 Male, age 74, unknown 30.2
2288 Male, age 75, left hemisphere 29.5
2481 Female, age 94, left hemisphere 23.1
2290 Female, age 72, unknown 22.7
1854 Male, age 80, left hemisphere 21.9
1857 Female, age 85, left hemisphere 21.9
2846 Female, age 79, unknown 19.0
Claustrum
nTPM: 36.2
2284 Female, age 91, both hemispheres 48.7
2568 Male, age 61, both hemispheres 45.6
2645 Female, age 72, unknown 43.0
2491 Male, age 75, both hemispheres 41.9
2198 Male, age 80, both hemispheres 34.8
2392 Female, age 94, both hemispheres 30.0
1956 Male, age 74, unknown 29.0
2292 Female, age 85, both hemispheres 28.1
2196 Female, age 79, unknown 24.5
Globus pallidus, externus
nTPM: 21.5
2772 Female, age 79, unknown 30.4
2567 Female, age 72, unknown 23.2
2646 Male, age 61, right hemisphere 21.6
1996 Male, age 80, right hemisphere 17.1
2395 Male, age 75, both hemispheres 15.3
Globus pallidus, internus
nTPM: 18.0
1818 Male, age 74, unknown 27.2
2566 Female, age 72, unknown 22.1
2483 Female, age 94, right hemisphere 20.5
2037 Male, age 80, right hemisphere 18.1
2111 Female, age 85, right hemisphere 13.6
2287 Male, age 75, right hemisphere 13.5
2778 Female, age 91, both hemispheres 10.7
Nucleus accumbens
nTPM: 24.6
2824 Male, age 61, right hemisphere 31.2
1856 Female, age 91, right hemisphere 30.1
2286 Male, age 75, left hemisphere 26.8
1783 Male, age 74, unknown 26.3
1806 Female, age 85, left hemisphere 22.0
2732 Male, age 80, right hemisphere 20.8
2698 Female, age 72, unknown 19.9
2391 Female, age 94, left hemisphere 19.7
Nucleus basalis of Meynert
nTPM: 22.5
2484 Female, age 94, left hemisphere 29.5
2821 Male, age 75, both hemispheres 23.1
2569 Male, age 61, both hemispheres 19.7
2393 Male, age 80, right hemisphere 17.7
Nucleus of the diagonal band
nTPM: 38.5
2029 Male, age 61, right hemisphere 42.7
2195 Female, age 85, both hemispheres 41.1
2775 Male, age 80, right hemisphere 39.7
1812 Female, age 91, both hemispheres 38.1
1979 Male, age 74, unknown 31.1
Olfactory tubercle
nTPM: 40.7
1998 Female, age 91, both hemispheres 47.7
2856 Male, age 75, right hemisphere 43.6
2487 Female, age 94, left hemisphere 39.2
1846 Male, age 80, right hemisphere 32.3
Putamen
nTPM: 22.5
2647 Male, age 75, left hemisphere 28.5
1937 Female, age 91, right hemisphere 25.7
1838 Male, age 80, right hemisphere 22.6
1829 Male, age 74, unknown 21.7
2466 Female, age 79, unknown 21.2
2482 Female, age 94, left hemisphere 20.0
2489 Female, age 72, unknown 18.0
Septal nuclei
nTPM: 35.2
1960 Male, age 74, unknown 44.7
2009 Female, age 91, both hemispheres 37.4
2031 Female, age 72, unknown 37.0
2059 Female, age 85, both hemispheres 35.6
2629 Female, age 94, right hemisphere 35.1
2394 Male, age 61, left hemisphere 33.1
2199 Male, age 80, right hemisphere 23.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.5
Samples: 246

Max nTPM: 63.0
Min nTPM: 12.2
Std nTPM: 6.5
Median nTPM: 27.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 63.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 48.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 47.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 44.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 41.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 41.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 40.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 40.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 40.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 39.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 39.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.9
Samples: 246

Max nTPM: 75.5
Min nTPM: 11.5
Std nTPM: 8.2
Median nTPM: 32.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 75.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 68.3
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 55.6
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 51.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 49.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 49.5
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 48.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 48.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 48.4
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 48.0
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 47.7
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Brain - Putamen (basal ganglia)
Average nTPM: 25.1
Samples: 205

Max nTPM: 44.6
Min nTPM: 13.1
Std nTPM: 5.8
Median nTPM: 24.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 44.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 41.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 38.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 37.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 36.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 36.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 36.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 36.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 35.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 35.8
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 35.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.9
FF:10164-103B2 76 years, female 59.9
Globus pallidus
Scaled Tags Per Million: 38.7
FF:10175-103C4 60 years, female 53.6
FF:10161-103A8 76 years, female 23.8
Nucleus accumbens
Scaled Tags Per Million: 66.7
FF:10037-101F1 23-56 years, mixed 66.7
Putamen
Scaled Tags Per Million: 58.8
FF:10176-103C5 60 years, female 58.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 26.1
Pig sample Sample description nTPM
Caudate
nTPM: 26.1
Samples: 4

Max nTPM: 31.9
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 27.2
Sample C Male 31.9
Sample D Male 24.0
Putamen
nTPM: 24.4
Samples: 4

Max nTPM: 31.7
Min nTPM: 17.7
Sample A Female 17.7
Sample B Female 21.0
Sample C Male 31.7
Sample D Male 27.3
Septum
nTPM: 23.8
Samples: 4

Max nTPM: 35.5
Min nTPM: 15.8
Sample A Female 24.2
Sample B Female 19.7
Sample C Male 35.5
Sample D Male 15.8
Ventral pallidum
nTPM: 25.2
Samples: 4

Max nTPM: 42.6
Min nTPM: 16.1
Sample A Female 22.5
Sample B Female 16.1
Sample C Male 42.6
Sample D Male 19.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 98.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 78.7
Samples: 4

Max nTPM: 83.6
Min nTPM: 73.8
Sample A Male 79.5
Sample B Male 83.6
Sample C Female 73.8
Sample D Female 77.8
Septum
nTPM: 89.1
Samples: 4

Max nTPM: 94.6
Min nTPM: 80.1
Sample A Male 94.6
Sample B Male 87.9
Sample C Female 93.9
Sample D Female 80.1
Ventral forebrain
nTPM: 98.4
Samples: 4

Max nTPM: 105.7
Min nTPM: 92.5
Sample A Male 92.5
Sample B Male 100.1
Sample C Female 105.7
Sample D Female 95.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.9
68844080 Antisense, RP_050217_02_H02, Mouse strain C57BL/6J (56 days, male) 7.9
Pallidum
Expression energy: 9.1
68844080 Antisense, RP_050217_02_H02, Mouse strain C57BL/6J (56 days, male) 9.1

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