BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:47.9 nTPM
HPA:47.9 nTPM
GTEx:45.9 nTPM
FANTOM5:5.0 Scaled Tags Per Million
Pig:37.7 nTPM
Mouse:90.1 nTPM
Allen mouse:4.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA061797
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.5
2846 Female, age 79, unknown 52.8
1857 Female, age 85, left hemisphere 51.4
2290 Female, age 72, unknown 50.7
1781 Male, age 74, unknown 47.0
1854 Male, age 80, left hemisphere 46.0
2289 Male, age 61, right hemisphere 43.3
2288 Male, age 75, left hemisphere 41.9
2481 Female, age 94, left hemisphere 39.1
Claustrum
nTPM: 37.8
2568 Male, age 61, both hemispheres 42.2
2284 Female, age 91, both hemispheres 39.3
2198 Male, age 80, both hemispheres 38.9
2491 Male, age 75, both hemispheres 37.5
2645 Female, age 72, unknown 37.5
2196 Female, age 79, unknown 36.7
2392 Female, age 94, both hemispheres 36.7
1956 Male, age 74, unknown 36.5
2292 Female, age 85, both hemispheres 34.7
Globus pallidus, externus
nTPM: 36.1
2646 Male, age 61, right hemisphere 38.8
2567 Female, age 72, unknown 37.0
1996 Male, age 80, right hemisphere 36.5
2772 Female, age 79, unknown 34.2
2395 Male, age 75, both hemispheres 34.1
Globus pallidus, internus
nTPM: 35.7
2483 Female, age 94, right hemisphere 39.1
1818 Male, age 74, unknown 36.9
2287 Male, age 75, right hemisphere 36.8
2566 Female, age 72, unknown 35.2
2037 Male, age 80, right hemisphere 34.9
2778 Female, age 91, both hemispheres 34.3
2111 Female, age 85, right hemisphere 32.7
Nucleus accumbens
nTPM: 40.9
1783 Male, age 74, unknown 46.5
1806 Female, age 85, left hemisphere 45.7
1856 Female, age 91, right hemisphere 44.9
2286 Male, age 75, left hemisphere 40.7
2698 Female, age 72, unknown 40.3
2824 Male, age 61, right hemisphere 39.7
2391 Female, age 94, left hemisphere 35.3
2732 Male, age 80, right hemisphere 34.2
Nucleus basalis of Meynert
nTPM: 40.8
2393 Male, age 80, right hemisphere 43.4
2569 Male, age 61, both hemispheres 41.7
2484 Female, age 94, left hemisphere 40.0
2821 Male, age 75, both hemispheres 37.9
Nucleus of the diagonal band
nTPM: 39.2
2029 Male, age 61, right hemisphere 41.9
1812 Female, age 91, both hemispheres 41.3
2775 Male, age 80, right hemisphere 40.2
2195 Female, age 85, both hemispheres 39.7
1979 Male, age 74, unknown 33.1
Olfactory tubercle
nTPM: 39.7
2856 Male, age 75, right hemisphere 40.1
2487 Female, age 94, left hemisphere 39.8
1846 Male, age 80, right hemisphere 39.7
1998 Female, age 91, both hemispheres 39.2
Putamen
nTPM: 47.9
2489 Female, age 72, unknown 51.9
1829 Male, age 74, unknown 51.0
1838 Male, age 80, right hemisphere 49.9
2466 Female, age 79, unknown 48.6
1937 Female, age 91, right hemisphere 47.7
2647 Male, age 75, left hemisphere 46.1
2482 Female, age 94, left hemisphere 39.9
Septal nuclei
nTPM: 37.9
2629 Female, age 94, right hemisphere 40.9
1960 Male, age 74, unknown 39.8
2031 Female, age 72, unknown 38.8
2009 Female, age 91, both hemispheres 37.8
2059 Female, age 85, both hemispheres 37.7
2394 Male, age 61, left hemisphere 36.4
2199 Male, age 80, right hemisphere 33.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.8
Samples: 246

Max nTPM: 72.3
Min nTPM: 19.7
Std nTPM: 10.2
Median nTPM: 44.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 72.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 71.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 70.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 69.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 69.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 69.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 67.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 67.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 66.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 66.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 65.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.3
Samples: 246

Max nTPM: 74.7
Min nTPM: 17.2
Std nTPM: 8.8
Median nTPM: 39.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 74.7
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 71.8
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 67.5
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 65.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 62.4
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 61.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 61.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 61.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 61.0
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 58.3
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 58.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 45.9
Samples: 205

Max nTPM: 77.1
Min nTPM: 22.9
Std nTPM: 10.9
Median nTPM: 43.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 77.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 74.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 73.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 72.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 72.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 71.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 69.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 69.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 68.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 66.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 66.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.7
FF:10164-103B2 76 years, female 3.7
Globus pallidus
Scaled Tags Per Million: 2.6
FF:10175-103C4 60 years, female 3.1
FF:10161-103A8 76 years, female 2.1
Nucleus accumbens
Scaled Tags Per Million: 4.6
FF:10037-101F1 23-56 years, mixed 4.6
Putamen
Scaled Tags Per Million: 5.0
FF:10176-103C5 60 years, female 5.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.7
Pig sample Sample description nTPM
Caudate
nTPM: 35.0
Samples: 4

Max nTPM: 42.5
Min nTPM: 29.6
Sample A Female 29.6
Sample B Female 37.0
Sample C Male 42.5
Sample D Male 30.7
Putamen
nTPM: 37.7
Samples: 4

Max nTPM: 47.8
Min nTPM: 30.3
Sample A Female 32.5
Sample B Female 30.3
Sample C Male 40.2
Sample D Male 47.8
Septum
nTPM: 28.2
Samples: 4

Max nTPM: 32.5
Min nTPM: 25.2
Sample A Female 27.3
Sample B Female 25.2
Sample C Male 32.5
Sample D Male 27.6
Ventral pallidum
nTPM: 33.8
Samples: 4

Max nTPM: 44.6
Min nTPM: 22.8
Sample A Female 22.8
Sample B Female 31.9
Sample C Male 44.6
Sample D Male 35.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 90.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 90.1
Samples: 4

Max nTPM: 94.9
Min nTPM: 85.3
Sample A Male 88.2
Sample B Male 94.9
Sample C Female 85.3
Sample D Female 92.0
Septum
nTPM: 44.7
Samples: 4

Max nTPM: 47.6
Min nTPM: 40.3
Sample A Male 47.6
Sample B Male 44.9
Sample C Female 46.0
Sample D Female 40.3
Ventral forebrain
nTPM: 72.1
Samples: 4

Max nTPM: 80.1
Min nTPM: 65.6
Sample A Male 71.2
Sample B Male 65.6
Sample C Female 80.1
Sample D Female 71.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.6
70445574 Antisense, RP_050614_04_B04, Mouse strain C57BL/6J (56 days, male) 4.6
Pallidum
Expression energy: 3.6
70445574 Antisense, RP_050614_04_B04, Mouse strain C57BL/6J (56 days, male) 3.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.