BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:7.7 nTPM
HPA:7.7 nTPM
GTEx:6.9 nTPM
FANTOM5:7.1 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:5.5 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA051607
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.2
2846 Female, age 79, unknown 8.5
2290 Female, age 72, unknown 7.5
2288 Male, age 75, left hemisphere 7.2
1854 Male, age 80, left hemisphere 7.1
1857 Female, age 85, left hemisphere 7.1
1781 Male, age 74, unknown 6.8
2481 Female, age 94, left hemisphere 6.7
2289 Male, age 61, right hemisphere 6.4
Claustrum
nTPM: 6.9
2645 Female, age 72, unknown 8.4
2198 Male, age 80, both hemispheres 7.6
2196 Female, age 79, unknown 7.0
2284 Female, age 91, both hemispheres 7.0
2568 Male, age 61, both hemispheres 6.9
2392 Female, age 94, both hemispheres 6.6
2292 Female, age 85, both hemispheres 6.5
1956 Male, age 74, unknown 6.1
2491 Male, age 75, both hemispheres 5.7
Globus pallidus, externus
nTPM: 7.7
2772 Female, age 79, unknown 8.4
2395 Male, age 75, both hemispheres 7.8
2646 Male, age 61, right hemisphere 7.6
1996 Male, age 80, right hemisphere 7.5
2567 Female, age 72, unknown 7.2
Globus pallidus, internus
nTPM: 7.2
2037 Male, age 80, right hemisphere 7.9
1818 Male, age 74, unknown 7.7
2483 Female, age 94, right hemisphere 7.3
2778 Female, age 91, both hemispheres 7.0
2111 Female, age 85, right hemisphere 6.9
2287 Male, age 75, right hemisphere 6.8
2566 Female, age 72, unknown 6.5
Nucleus accumbens
nTPM: 6.8
1856 Female, age 91, right hemisphere 8.6
2824 Male, age 61, right hemisphere 7.0
2732 Male, age 80, right hemisphere 6.9
1806 Female, age 85, left hemisphere 6.8
1783 Male, age 74, unknown 6.6
2286 Male, age 75, left hemisphere 6.5
2698 Female, age 72, unknown 6.3
2391 Female, age 94, left hemisphere 6.1
Nucleus basalis of Meynert
nTPM: 7.2
2821 Male, age 75, both hemispheres 7.6
2484 Female, age 94, left hemisphere 7.5
2393 Male, age 80, right hemisphere 7.2
2569 Male, age 61, both hemispheres 6.3
Nucleus of the diagonal band
nTPM: 7.4
1979 Male, age 74, unknown 7.9
1812 Female, age 91, both hemispheres 7.4
2195 Female, age 85, both hemispheres 7.3
2775 Male, age 80, right hemisphere 7.3
2029 Male, age 61, right hemisphere 7.2
Olfactory tubercle
nTPM: 7.0
2856 Male, age 75, right hemisphere 7.8
1998 Female, age 91, both hemispheres 7.3
2487 Female, age 94, left hemisphere 6.5
1846 Male, age 80, right hemisphere 6.3
Putamen
nTPM: 7.2
2466 Female, age 79, unknown 8.2
1838 Male, age 80, right hemisphere 7.6
2647 Male, age 75, left hemisphere 7.3
1829 Male, age 74, unknown 7.2
2482 Female, age 94, left hemisphere 7.0
2489 Female, age 72, unknown 6.6
1937 Female, age 91, right hemisphere 6.3
Septal nuclei
nTPM: 7.3
2009 Female, age 91, both hemispheres 8.3
1960 Male, age 74, unknown 8.1
2394 Male, age 61, left hemisphere 7.7
2031 Female, age 72, unknown 7.6
2629 Female, age 94, right hemisphere 6.7
2199 Male, age 80, right hemisphere 6.5
2059 Female, age 85, both hemispheres 6.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.6
Samples: 246

Max nTPM: 12.3
Min nTPM: 0.6
Std nTPM: 2.0
Median nTPM: 6.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 12.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 11.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 11.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 11.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 11.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 10.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 10.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 10.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 10.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 10.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.5
Samples: 246

Max nTPM: 13.9
Min nTPM: 0.1
Std nTPM: 2.1
Median nTPM: 6.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 13.9
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 12.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 12.3
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 12.2
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 11.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 11.6
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 11.5
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 11.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 11.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 11.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 11.1
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Brain - Putamen (basal ganglia)
Average nTPM: 6.9
Samples: 205

Max nTPM: 14.7
Min nTPM: 2.1
Std nTPM: 2.0
Median nTPM: 6.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 14.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 13.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 11.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 11.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 11.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 10.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 10.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 10.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 10.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 10.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 10.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.8
FF:10164-103B2 76 years, female 4.8
Globus pallidus
Scaled Tags Per Million: 3.9
FF:10175-103C4 60 years, female 3.9
FF:10161-103A8 76 years, female 3.9
Nucleus accumbens
Scaled Tags Per Million: 4.7
FF:10037-101F1 23-56 years, mixed 4.7
Putamen
Scaled Tags Per Million: 7.1
FF:10176-103C5 60 years, female 7.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Caudate
nTPM: 4.1
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.2
Sample A Female 3.9
Sample B Female 4.9
Sample C Male 4.5
Sample D Male 3.2
Putamen
nTPM: 5.0
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.2
Sample A Female 5.8
Sample B Female 4.2
Sample C Male 5.7
Sample D Male 4.4
Septum
nTPM: 4.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.1
Sample A Female 4.8
Sample B Female 4.1
Sample C Male 4.5
Sample D Male 3.1
Ventral pallidum
nTPM: 4.0
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 5.5
Sample C Male 3.7
Sample D Male 3.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.0
Samples: 4

Max nTPM: 4.9
Min nTPM: 1.2
Sample A Male 3.1
Sample B Male 4.9
Sample C Female 2.8
Sample D Female 1.2
Septum
nTPM: 5.5
Samples: 4

Max nTPM: 8.2
Min nTPM: 3.1
Sample A Male 5.8
Sample B Male 5.0
Sample C Female 8.2
Sample D Female 3.1
Ventral forebrain
nTPM: 3.8
Samples: 4

Max nTPM: 5.7
Min nTPM: 1.7
Sample A Male 3.4
Sample B Male 4.4
Sample C Female 5.7
Sample D Female 1.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
75198196 Antisense, RP_060502_02_B07, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
75198196 Antisense, RP_060502_02_B07, Mouse strain C57BL/6J (56 days, male) 0.1

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