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TISSUE PONS AND MEDULLA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:101.0 nTPM
HPA:101.0 nTPM
FANTOM5:76.8 Scaled Tags Per Million

PONS AND MEDULLA - Annotated protein expression
Pending normal tissue analysis

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 101.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 85.3
2301 Female, age 85, both hemispheres 88.5
2090 Male, age 80, both hemispheres 87.9
2188 Female, age 91, both hemispheres 82.5
1984 Male, age 76, both hemispheres 82.2
Area postrema
nTPM: 91.4
2054 Male, age 76, both hemispheres 93.9
2799 Male, age 61, both hemispheres 91.2
2306 Male, age 80, both hemispheres 89.2
Cuneate nuclei
nTPM: 92.4
2376 Male, age 61, both hemispheres 97.2
2381 Male, age 80, both hemispheres 93.7
2131 Male, age 76, both hemispheres 86.2
Dorsal cochlear nucleus
nTPM: 91.4
2802 Male, age 74, right hemisphere 98.0
2370 Male, age 61, both hemispheres 93.5
2058 Male, age 76, both hemispheres 91.0
2378 Male, age 80, both hemispheres 90.2
2187 Female, age 91, both hemispheres 84.1
Dorsal medullary reticular nucleus
nTPM: 89.1
2088 Male, age 76, both hemispheres 91.4
2373 Male, age 61, both hemispheres 89.9
2040 Female, age 85, both hemispheres 86.1
Dorsal motor vagal complex
nTPM: 95.3
2807 Female, age 85, both hemispheres 104.6
2797 Male, age 61, both hemispheres 104.0
2185 Male, age 76, both hemispheres 97.9
2643 Male, age 74, both hemispheres 96.6
2813 Female, age 72, unknown 95.1
2133 Female, age 91, both hemispheres 90.3
2844 Male, age 55, unknown 89.7
2000 Male, age 74, unknown 84.5
Dorsal tegmental nucleus
nTPM: 88.3
2358 Male, age 61, both hemispheres 96.1
1936 Male, age 76, left hemisphere 87.7
2326 Male, age 74, both hemispheres 86.6
2083 Male, age 80, both hemispheres 82.9
Dorsolateral tegmental area
nTPM: 92.1
2337 Male, age 61, both hemispheres 118.4
2751 Female, age 85, both hemispheres 88.3
2360 Male, age 74, both hemispheres 86.4
2141 Male, age 76, both hemispheres 84.1
2654 Male, age 80, both hemispheres 83.4
Gigantocellular reticular nuclei, medullary
nTPM: 88.3
2462 Male, age 74, both hemispheres 91.8
2387 Female, age 91, both hemispheres 91.5
2310 Male, age 80, both hemispheres 88.1
2022 Male, age 76, right hemisphere 87.7
1876 Female, age 85, both hemispheres 86.3
2314 Male, age 61, both hemispheres 84.3
Gigantocellular reticular nuclei, pars
nTPM: 86.7
2330 Male, age 80, both hemispheres 91.0
2706 Male, age 80, both hemispheres 90.0
2168 Male, age 76, both hemispheres 86.4
2084 Female, age 85, both hemispheres 83.1
2336 Male, age 61, both hemispheres 83.0
Inferior olive
nTPM: 87.2
2178 Male, age 61, both hemispheres 92.7
2379 Male, age 80, both hemispheres 90.5
2628 Female, age 91, both hemispheres 87.8
2563 Male, age 74, both hemispheres 83.0
2085 Female, age 85, both hemispheres 82.2
Kolliker-Fuse nucleus
nTPM: 91.8
2163 Male, age 80, both hemispheres 98.6
2315 Male, age 76, right hemisphere 91.0
2793 Female, age 91, left hemisphere 85.8
Lateral lemniscal nuclei
nTPM: 86.2
2169 Male, age 76, both hemispheres 90.0
2036 Male, age 80, both hemispheres 88.5
2453 Male, age 74, right hemisphere 84.9
2320 Female, age 91, left hemisphere 84.6
2746 Female, age 85, left hemisphere 82.9
Lateral medullary reticular nucleus
nTPM: 85.2
2044 Male, age 76, both hemispheres 89.9
2374 Male, age 61, both hemispheres 88.5
2190 Female, age 85, both hemispheres 86.5
2852 Male, age 80, both hemispheres 84.2
2804 Female, age 91, both hemispheres 83.0
2305 Male, age 74, both hemispheres 79.2
Lateral parabrachial nucleus
nTPM: 87.1
2792 Male, age 76, both hemispheres 92.7
2790 Male, age 61, both hemispheres 89.6
2139 Female, age 85, right hemisphere 83.3
2013 Male, age 80, both hemispheres 82.8
Lateral vestibular nucleus
nTPM: 91.6
2184 Male, age 76, both hemispheres 96.0
2311 Male, age 80, both hemispheres 87.1
Locus coeruleus
nTPM: 86.1
2162 Male, age 80, both hemispheres 88.3
2014 Male, age 55, unknown 88.2
2720 Male, age 74, both hemispheres 87.9
2123 Female, age 91, both hemispheres 85.7
2317 Female, age 72, unknown 84.6
2788 Male, age 74, unknown 84.3
1980 Male, age 76, both hemispheres 83.6
Medial olivary nucleus
nTPM: 84.7
1962 Male, age 76, both hemispheres 92.2
2851 Male, age 80, both hemispheres 84.4
2138 Female, age 91, both hemispheres 83.2
1943 Male, age 61, both hemispheres 79.1
Medial parabrachial nucleus
nTPM: 88.4
2156 Male, age 61, both hemispheres 90.7
2786 Male, age 76, both hemispheres 89.9
2854 Male, age 80, both hemispheres 87.9
2170 Female, age 91, both hemispheres 87.3
2463 Female, age 85, right hemisphere 86.1
Medial periolivary nuclei
nTPM: 85.9
2171 Female, age 85, both hemispheres 92.2
2063 Male, age 76, both hemispheres 86.2
2081 Male, age 80, both hemispheres 84.9
2458 Female, age 91, both hemispheres 84.7
2791 Male, age 74, right hemisphere 81.4
Medial vestibular nucleus
nTPM: 86.9
2134 Male, age 76, both hemispheres 92.0
2624 Male, age 61, both hemispheres 89.6
2803 Female, age 91, both hemispheres 87.7
2743 Female, age 85, both hemispheres 86.6
2093 Male, age 80, both hemispheres 83.6
2801 Male, age 74, both hemispheres 82.0
Motor facial nucleus
nTPM: 85.3
2697 Female, age 85, both hemispheres 90.5
2126 Male, age 61, both hemispheres 87.9
2327 Male, age 80, both hemispheres 85.6
2795 Female, age 91, both hemispheres 83.9
2365 Male, age 74, right hemisphere 83.4
2062 Male, age 76, both hemispheres 80.8
Motor hypoglossal nucleus
nTPM: 91.2
2461 Male, age 61, both hemispheres 101.6
2182 Male, age 80, both hemispheres 94.8
2132 Female, age 85, both hemispheres 88.2
2125 Female, age 91, both hemispheres 86.0
2277 Male, age 76, both hemispheres 85.4
Motor trigeminal nucleus
nTPM: 89.4
2560 Male, age 74, both hemispheres 94.0
2335 Male, age 61, both hemispheres 92.7
2309 Male, age 76, both hemispheres 88.0
2321 Female, age 91, both hemispheres 87.0
2079 Male, age 80, both hemispheres 85.2
Nuclei of the trapezoid body
nTPM: 85.9
2159 Male, age 61, both hemispheres 91.9
2735 Female, age 85, both hemispheres 86.7
2166 Male, age 80, both hemispheres 85.8
2368 Female, age 91, both hemispheres 84.3
1983 Male, age 76, both hemispheres 80.8
Nucleus ambiguus
nTPM: 97.4
2096 Female, age 85, both hemispheres 105.5
2071 Male, age 76, both hemispheres 89.2
Nucleus cuneatus
nTPM: 97.2
2564 Male, age 74, both hemispheres 120.7
2562 Male, age 61, both hemispheres 106.5
2808 Female, age 85, both hemispheres 91.9
2805 Female, age 91, both hemispheres 91.5
2380 Male, age 80, both hemispheres 87.2
2100 Male, age 76, both hemispheres 85.2
Nucleus gracilis
nTPM: 101.0
2299 Female, age 85, both hemispheres 107.3
2627 Male, age 74, both hemispheres 102.6
2382 Male, age 80, both hemispheres 93.1
Nucleus raphe magnus
nTPM: 86.5
2051 Male, age 76, both hemispheres 94.4
2172 Female, age 85, both hemispheres 86.7
2455 Male, age 74, both hemispheres 85.4
2160 Male, age 61, both hemispheres 84.6
2328 Male, age 80, both hemispheres 84.2
2459 Female, age 91, both hemispheres 83.8
Nucleus raphe obscurus
nTPM: 84.5
2142 Male, age 76, midline 88.0
2800 Male, age 61, midline 85.1
2845 Female, age 85, midline 80.4
Nucleus raphe pallidus
nTPM: 86.5
2145 Male, age 76, midline 92.2
2183 Male, age 80, midline 89.0
1924 Male, age 61, midline 78.2
Nucleus tractus solitarii
nTPM: 97.4
2191 Female, age 85, both hemispheres 109.1
2307 Male, age 80, both hemispheres 101.9
2656 Male, age 76, both hemispheres 93.0
2144 Female, age 91, right hemisphere 85.6
Paramedian reticular nucleus
nTPM: 87.8
2052 Male, age 76, both hemispheres 90.2
2050 Female, age 85, both hemispheres 88.9
2313 Male, age 61, both hemispheres 86.9
2057 Male, age 80, both hemispheres 85.1
Parvicellular reticular nuclei
nTPM: 86.3
2095 Male, age 76, both hemispheres 88.3
2558 Male, age 74, both hemispheres 87.9
2119 Male, age 80, both hemispheres 82.8
Parvicellular reticular nuclei, medullary
nTPM: 91.8
2181 Male, age 80, left hemisphere 94.4
2189 Female, age 91, both hemispheres 91.7
2091 Female, age 85, both hemispheres 89.4
Peritrigeminal nucleus
nTPM: 87.7
2136 Male, age 76, both hemispheres 88.2
2067 Female, age 85, both hemispheres 87.9
2179 Male, age 61, both hemispheres 87.0
Pontine nuclei
nTPM: 85.0
1863 Male, age 55, unknown 88.5
2319 Female, age 91, both hemispheres 86.3
2787 Female, age 85, both hemispheres 85.9
1968 Male, age 76, left hemisphere 85.5
2115 Male, age 80, left hemisphere 84.7
2727 Male, age 61, right hemisphere 84.5
2454 Male, age 74, left hemisphere 83.4
2109 Female, age 72, unknown 80.9
Pontine raphe nucleus
nTPM: 87.6
2853 Male, age 76, midline 90.1
2122 Female, age 85, midline 85.1
Posteroventral cochlear nucleus
nTPM: 86.0
2371 Male, age 61, both hemispheres 89.8
2752 Female, age 85, both hemispheres 89.1
2070 Male, age 76, both hemispheres 85.9
2135 Female, age 91, both hemispheres 83.5
2341 Male, age 80, both hemispheres 81.7
Prepositus hypoglossal nucleus
nTPM: 86.1
2855 Female, age 85, right hemisphere 88.9
2086 Male, age 80, both hemispheres 83.3
Principal sensory trigeminal nucleus
nTPM: 87.3
2324 Male, age 76, both hemispheres 94.9
2367 Female, age 91, left hemisphere 86.2
2008 Male, age 80, left hemisphere 86.0
2158 Male, age 61, both hemispheres 82.1
Reticular pontine nucleus, caudal
nTPM: 85.4
2559 Male, age 74, both hemispheres 87.4
2092 Male, age 76, both hemispheres 86.8
2332 Male, age 80, right hemisphere 85.8
2457 Female, age 91, both hemispheres 81.7
Reticular pontine nucleus, oral
nTPM: 87.6
2167 Male, age 76, both hemispheres 95.1
2366 Female, age 91, both hemispheres 88.1
2361 Male, age 74, both hemispheres 86.8
1939 Male, age 80, both hemispheres 85.4
2012 Female, age 85, both hemispheres 82.9
Reticulotegmental nucleus
nTPM: 87.7
2325 Male, age 76, both hemispheres 90.1
2322 Female, age 91, both hemispheres 87.6
2452 Male, age 74, both hemispheres 87.0
2333 Male, age 80, both hemispheres 86.0
Spinal trigeminal nucleus, caudal
nTPM: 93.4
2642 Male, age 74, both hemispheres 101.7
2390 Female, age 91, both hemispheres 93.3
2308 Male, age 80, both hemispheres 93.0
2312 Male, age 61, both hemispheres 90.6
2447 Male, age 76, both hemispheres 88.7
Spinal trigeminal nucleus, interpolar
nTPM: 93.3
2386 Female, age 85, both hemispheres 102.1
2625 Male, age 61, both hemispheres 100.7
2033 Male, age 80, both hemispheres 93.7
2066 Male, age 76, right hemisphere 85.6
2389 Female, age 91, both hemispheres 84.5
Spinal trigeminal nucleus, oral
nTPM: 89.4
2737 Female, age 85, both hemispheres 92.2
2164 Male, age 80, both hemispheres 89.7
1978 Male, age 76, both hemispheres 86.3
Spinal vestibular nucleus
nTPM: 89.5
2384 Male, age 74, both hemispheres 95.3
2796 Male, age 61, both hemispheres 93.2
2748 Male, age 76, both hemispheres 90.6
2806 Female, age 85, both hemispheres 87.5
2186 Female, age 91, both hemispheres 85.7
2780 Male, age 80, both hemispheres 84.8
Subcoeruleus area
nTPM: 88.6
2451 Male, age 74, both hemispheres 103.2
2323 Female, age 91, left hemisphere 87.0
2369 Female, age 85, left hemisphere 85.2
2089 Male, age 76, left hemisphere 84.3
1958 Male, age 80, both hemispheres 83.4
Superior olive
nTPM: 86.3
2329 Male, age 80, right hemisphere 87.9
2561 Female, age 91, both hemispheres 87.7
2020 Male, age 76, both hemispheres 86.0
1875 Female, age 85, both hemispheres 85.2
2364 Male, age 74, right hemisphere 84.4
Superior vestibular nucleus
nTPM: 84.5
2061 Male, age 76, both hemispheres 86.5
2383 Male, age 74, both hemispheres 84.1
2015 Male, age 80, both hemispheres 83.0
Ventral medullary reticular nucleus
nTPM: 87.6
2372 Male, age 61, both hemispheres 89.1
2060 Male, age 76, both hemispheres 86.1
Ventral periolivary nuclei
nTPM: 88.1
2130 Female, age 85, both hemispheres 92.3
2165 Male, age 80, both hemispheres 89.8
2023 Male, age 76, both hemispheres 85.4
2794 Female, age 91, left hemisphere 84.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 87.5
2741 Female, age 85, both hemispheres 91.2
1986 Male, age 76, both hemispheres 89.5
2180 Male, age 61, both hemispheres 87.2
2302 Female, age 91, both hemispheres 86.9
2118 Male, age 80, both hemispheres 82.7
Ventrolateral tegmental area, A5 NE cell group
nTPM: 88.2
2359 Male, age 61, both hemispheres 92.7
2456 Female, age 91, both hemispheres 90.4
1959 Male, age 76, both hemispheres 87.9
2161 Male, age 80, both hemispheres 87.9
2840 Female, age 85, both hemispheres 86.9
2449 Male, age 74, both hemispheres 83.3

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 76.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 35.6
FF:10165-103B3 76 years, female 35.7
FF:10182-103D2 60 years, female 35.5
Medulla oblongata
Scaled Tags Per Million: 54.6
FF:10038-101F2 18-64 years, mixed 95.3
FF:10155-103A2 76 years, female 38.8
FF:10174-103C3 60 years, female 29.6
Pons
Scaled Tags Per Million: 76.8
FF:10033-101E6 18-54 years, mixed 76.8

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