We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
VPS28
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • VPS28
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:0.1 nTPM
HPA:0.1 nTPM
GTEx:145.1 nTPM
FANTOM5:45.0 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:215.2 nTPM
Allen mouse:9.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 0.1
Sample id Sample description nTPM
Amygdala
nTPM: 0.1
2514 Male, age 75, right hemisphere 0.7
2517 Female, age 94, left hemisphere 0.2
1987 Female, age 91, left hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 0.0
1955 Male, age 76, both hemispheres 0.2
2609 Male, age 75, right hemisphere 0.1
2110 Male, age 80, left hemisphere 0.0
2243 Female, age 91, right hemisphere 0.0
2685 Female, age 94, left hemisphere 0.0
2827 Female, age 67, right hemisphere 0.0
Central amygdala
nTPM: 0.0
1905 Male, age 76, both hemispheres 0.0
2239 Male, age 80, left hemisphere 0.0
2515 Male, age 75, right hemisphere 0.0
2701 Female, age 91, right hemisphere 0.0
2826 Female, age 94, left hemisphere 0.0
Corticomedial amygdala
nTPM: 0.1
2535 Female, age 67, right hemisphere 0.8
2242 Female, age 91, right hemisphere 0.2
2429 Female, age 94, left hemisphere 0.1
2240 Male, age 76, both hemispheres 0.0
2428 Male, age 75, right hemisphere 0.0
2829 Male, age 80, left hemisphere 0.0
Lateral amygdala
nTPM: 0.1
2830 Female, age 67, right hemisphere 0.3
2256 Male, age 80, left hemisphere 0.1
2516 Male, age 75, right hemisphere 0.1
1883 Male, age 76, both hemispheres 0.0
2255 Female, age 91, right hemisphere 0.0
2534 Female, age 94, left hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 0.0
1974 Female, age 91, both hemispheres 0.0
2201 Male, age 74, unknown 0.0
2486 Female, age 94, both hemispheres 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 145.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 145.1
Samples: 152

Max nTPM: 345.8
Min nTPM: 90.1
Std nTPM: 37.7
Median nTPM: 138.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 345.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 307.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 286.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 268.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 250.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 208.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 207.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 206.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 201.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 200.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 195.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 193.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 191.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 188.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 186.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 181.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 180.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 178.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 176.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 175.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 172.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 170.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 170.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 169.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 169.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 168.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 168.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 167.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 166.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 165.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 164.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 164.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 164.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 163.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 162.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 162.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 161.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 159.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 158.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 157.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 157.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 157.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 156.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 156.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 156.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 155.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 151.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 150.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 150.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 150.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 149.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 149.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 149.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 148.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 147.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 146.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 146.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 145.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 144.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 143.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 143.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 142.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 142.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 142.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 142.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 141.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 141.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 141.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 141.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 141.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 141.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 140.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 140.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 140.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 140.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 139.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 137.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 137.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 136.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 136.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 136.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 136.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 135.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 135.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 135.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 134.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 133.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 133.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 133.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 132.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 132.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 131.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 131.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 131.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 131.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 130.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 130.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 130.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 130.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 129.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 128.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 128.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 128.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 128.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 126.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 126.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 126.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 126.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 126.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 126.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 125.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 124.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 124.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 124.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 124.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 124.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 122.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 119.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 119.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 119.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 119.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 118.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 118.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 118.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 116.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 116.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 113.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 113.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 112.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 111.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 111.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 111.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 109.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 108.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 108.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 108.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 107.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 107.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 106.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 106.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 104.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 103.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 103.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 102.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 99.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 99.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 99.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 98.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 98.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 97.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 91.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 90.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 45.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 45.0
FF:10151-102I7 76 years, female 45.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 20.0
Pig sample Sample description nTPM
Amygdala
nTPM: 20.0
Samples: 4

Max nTPM: 26.9
Min nTPM: 15.8
Sample A Female 26.9
Sample B Female 15.8
Sample C Male 18.5
Sample D Male 18.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 215.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 215.2
Samples: 4

Max nTPM: 221.2
Min nTPM: 208.0
Sample A Male 220.7
Sample B Male 221.2
Sample C Female 208.0
Sample D Female 210.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.7
68321662 Antisense, RP_041130_02_H03, Mouse strain C57BL/6J (56 days, male) 9.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.