MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:183.3 nTPM
HPA:183.3 nTPM
GTEx:172.1 nTPM
FANTOM5:294.5 Scaled Tags Per Million
Pig:166.9 nTPM
Mouse:321.8 nTPM
Allen mouse:25.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 183.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 164.2
2411 Female, age 72, unknown 183.4
1870 Female, age 42, unknown 178.2
2828 Female, age 72, unknown 171.0
1833 Male, age 53, unknown 165.0
2586 Male, age 75, left hemisphere 164.5
2019 Male, age 18, unknown 163.7
1830 Male, age 51, unknown 161.4
1827 Male, age 72, unknown 157.6
2666 Male, age 74, left hemisphere 149.5
2219 Male, age 76, both hemispheres 147.7
Dorsal raphe nucleus
nTPM: 172.0
2298 Female, age 72, unknown 184.6
2047 Male, age 72, unknown 178.5
2750 Male, age 76, both hemispheres 169.2
1828 Male, age 53, unknown 164.1
2016 Female, age 72, unknown 163.6
Inferior colliculus
nTPM: 164.3
2097 Female, age 72, unknown 181.1
1848 Female, age 42, unknown 165.0
1890 Male, age 53, unknown 163.9
2849 Male, age 72, unknown 147.0
Median raphe nucleus
nTPM: 166.4
2220 Male, age 76, midline 166.4
Pedunculopontine tegmental nucleus
nTPM: 169.5
2334 Male, age 80, both hemispheres 176.1
2338 Male, age 61, both hemispheres 167.7
1921 Female, age 85, both hemispheres 164.7
Periaquaductal grey, anterior
nTPM: 166.5
1795 Male, age 51, unknown 169.3
1947 Male, age 18, unknown 169.1
2502 Female, age 75, unknown 161.0
Periaquaductal grey, dorsal
nTPM: 154.3
2464 Female, age 72, unknown 158.5
1831 Male, age 72, unknown 153.8
1840 Male, age 53, unknown 153.7
2850 Male, age 76, both hemispheres 151.0
Periaquaductal grey, lateral
nTPM: 166.0
2140 Male, age 76, both hemispheres 171.2
2053 Male, age 18, unknown 166.4
2272 Male, age 74, both hemispheres 160.4
Pretectal area
nTPM: 165.0
2667 Female, age 75, unknown 194.3
2273 Male, age 74, both hemispheres 176.2
2224 Female, age 72, unknown 168.1
1817 Female, age 42, unknown 168.0
2007 Male, age 72, unknown 165.6
1815 Male, age 53, unknown 161.1
1944 Female, age 72, unknown 160.1
2825 Male, age 18, unknown 159.1
1816 Male, age 51, unknown 157.7
2316 Male, age 76, right hemisphere 154.8
2407 Male, age 75, both hemispheres 150.4
Red nucleus
nTPM: 181.3
1904 Male, age 53, unknown 202.7
1821 Female, age 72, unknown 200.8
1954 Female, age 42, unknown 198.2
2227 Male, age 72, unknown 196.6
2503 Female, age 72, unknown 194.8
2769 Male, age 72, unknown 187.0
1865 Male, age 51, unknown 177.9
2785 Male, age 18, unknown 173.8
2823 Male, age 76, right hemisphere 171.9
2725 Female, age 75, unknown 169.6
2588 Male, age 74, left hemisphere 155.4
2584 Male, age 75, left hemisphere 147.1
Substantia nigra
nTPM: 174.2
1916 Female, age 42, unknown 206.8
1851 Male, age 51, unknown 203.5
2699 Male, age 18, unknown 182.2
2583 Male, age 75, right hemisphere 177.8
1889 Female, age 72, unknown 175.8
2590 Female, age 75, unknown 162.1
2409 Female, age 72, unknown 161.9
2241 Male, age 72, unknown 160.2
1941 Male, age 53, unknown 156.9
2665 Male, age 74, both hemispheres 154.9
Superior colliculus
nTPM: 161.5
1913 Female, age 42, unknown 179.5
1796 Male, age 53, unknown 172.6
1995 Male, age 72, unknown 171.9
2587 Male, age 74, left hemisphere 163.5
2087 Female, age 72, unknown 162.1
2668 Female, age 75, unknown 159.9
2261 Male, age 18, unknown 159.8
2664 Male, age 75, both hemispheres 151.4
1839 Male, age 51, unknown 149.4
1895 Male, age 76, right hemisphere 145.2
Ventral tegmental area
nTPM: 183.3
1915 Female, age 42, unknown 207.5
2410 Female, age 72, unknown 189.0
1942 Male, age 51, unknown 178.3
2223 Female, age 72, unknown 178.1
2021 Male, age 53, unknown 177.5
2218 Male, age 76, both hemispheres 169.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 172.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 172.1
Samples: 139

Max nTPM: 490.3
Min nTPM: 92.5
Std nTPM: 52.5
Median nTPM: 162.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 490.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 442.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 290.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 275.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 266.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 266.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 264.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 261.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 252.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 240.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 240.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 294.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 294.5
FF:10158-103A5 76 years, female 294.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 166.9
Pig sample Sample description nTPM
Midbrain
nTPM: 164.6
Samples: 4

Max nTPM: 273.5
Min nTPM: 118.4
Sample A Female 273.5
Sample B Female 143.2
Sample C Male 123.3
Sample D Male 118.4
Periaqueductal gray
nTPM: 126.9
Samples: 3

Max nTPM: 133.5
Min nTPM: 115.5
Sample B Female 131.6
Sample C Male 133.5
Sample D Male 115.5
Substantia nigra
nTPM: 166.9
Samples: 4

Max nTPM: 191.7
Min nTPM: 151.8
Sample A Female 191.7
Sample B Female 151.8
Sample C Male 157.6
Sample D Male 166.5
Superior colliculi
nTPM: 164.1
Samples: 4

Max nTPM: 189.6
Min nTPM: 144.0
Sample A Female 189.6
Sample B Female 175.5
Sample C Male 147.3
Sample D Male 144.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 321.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 321.8
Samples: 4

Max nTPM: 330.9
Min nTPM: 306.6
Sample A Male 330.7
Sample B Male 318.9
Sample C Female 306.6
Sample D Female 330.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 25.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.2
293263 Antisense, RP_040617_01_A10, Mouse strain C57BL/6J (56 days, male) 25.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.