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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:187.4 nTPM
HPA:101.3 nTPM
GTEx:187.4 nTPM
FANTOM5:303.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA068843Antibody CAB004587
Glandular cells LowMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 101.3
overview
Male, age 65
Small intestine sample 232
nTPM: 114.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 89.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 105.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 95.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 187.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 187.4
Samples: 187

Max nTPM: 356.1
Min nTPM: 109.8
Std nTPM: 52.0
Median nTPM: 173.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 356.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 329.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 323.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 321.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 313.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 303.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 301.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 296.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 296.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 292.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 289.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 288.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 279.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 276.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 272.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 271.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 271.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 271.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 269.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 268.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 267.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 267.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 261.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 259.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 256.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 255.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 254.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 251.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 250.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 250.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 248.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 243.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 240.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 238.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 237.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 236.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 234.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 226.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 223.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 223.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 218.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 216.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 215.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 215.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 213.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 213.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 212.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 211.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 210.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 210.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 209.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 209.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 208.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 207.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 207.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 205.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 205.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 204.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 204.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 203.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 202.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 201.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 201.0
GTEX-1192X-2526-SM-59868 50-59 years, male 200.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 200.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 197.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 197.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 197.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 197.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 195.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 193.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 193.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 191.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 190.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 187.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 186.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 186.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 186.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 185.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 184.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 183.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 183.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 182.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 182.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 182.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 181.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 181.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 179.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 177.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 177.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 176.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 175.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 174.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 173.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 173.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 172.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 169.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 168.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 167.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 167.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 167.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 166.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 166.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 165.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 165.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 165.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 165.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 165.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 165.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 164.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 163.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 163.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 163.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 162.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 162.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 162.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 161.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 160.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 159.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 159.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 159.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 158.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 158.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 158.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 157.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 157.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 157.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 156.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 156.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 155.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 155.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 154.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 154.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 154.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 152.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 151.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 150.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 150.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 149.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 148.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 148.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 148.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 147.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 146.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 146.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 145.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 144.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 144.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 143.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 142.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 142.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 142.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 142.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 141.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 141.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 140.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 140.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 138.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 138.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 137.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 137.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 136.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 135.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 135.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 135.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 135.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 134.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 132.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 131.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 130.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 129.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 127.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 125.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 124.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 123.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 121.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 121.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 121.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 120.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 119.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 118.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 116.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 115.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 115.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 112.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 111.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 109.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 303.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 303.8
FF:10024-101D6 15,40,85 years, mixed 303.8

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