BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.5 nTPM
HPA:29.5 nTPM
GTEx:29.2 nTPM
FANTOM5:2.6 Scaled Tags Per Million
Pig:0.5 nTPM
Mouse:15.9 nTPM
Allen mouse:1.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 29.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.6
2481 Female, age 94, left hemisphere 32.2
2289 Male, age 61, right hemisphere 27.8
2288 Male, age 75, left hemisphere 23.3
2290 Female, age 72, unknown 22.7
1854 Male, age 80, left hemisphere 21.9
1857 Female, age 85, left hemisphere 21.9
1781 Male, age 74, unknown 21.8
2846 Female, age 79, unknown 16.9
Claustrum
nTPM: 17.7
2568 Male, age 61, both hemispheres 21.6
2491 Male, age 75, both hemispheres 20.6
2645 Female, age 72, unknown 19.3
2284 Female, age 91, both hemispheres 18.2
2198 Male, age 80, both hemispheres 17.7
2196 Female, age 79, unknown 17.0
1956 Male, age 74, unknown 15.9
2392 Female, age 94, both hemispheres 15.6
2292 Female, age 85, both hemispheres 13.7
Globus pallidus, externus
nTPM: 29.5
2646 Male, age 61, right hemisphere 41.8
2567 Female, age 72, unknown 33.4
2772 Female, age 79, unknown 28.4
1996 Male, age 80, right hemisphere 26.8
2395 Male, age 75, both hemispheres 16.8
Globus pallidus, internus
nTPM: 22.6
1818 Male, age 74, unknown 28.3
2483 Female, age 94, right hemisphere 24.9
2037 Male, age 80, right hemisphere 23.7
2566 Female, age 72, unknown 23.3
2287 Male, age 75, right hemisphere 20.3
2111 Female, age 85, right hemisphere 19.8
2778 Female, age 91, both hemispheres 17.6
Nucleus accumbens
nTPM: 21.9
2286 Male, age 75, left hemisphere 26.8
1783 Male, age 74, unknown 24.8
2824 Male, age 61, right hemisphere 24.2
2391 Female, age 94, left hemisphere 22.2
1806 Female, age 85, left hemisphere 21.9
1856 Female, age 91, right hemisphere 19.7
2698 Female, age 72, unknown 18.5
2732 Male, age 80, right hemisphere 17.2
Nucleus basalis of Meynert
nTPM: 23.5
2569 Male, age 61, both hemispheres 44.4
2484 Female, age 94, left hemisphere 20.0
2393 Male, age 80, right hemisphere 16.4
2821 Male, age 75, both hemispheres 13.3
Nucleus of the diagonal band
nTPM: 19.4
1979 Male, age 74, unknown 20.9
2029 Male, age 61, right hemisphere 20.6
2195 Female, age 85, both hemispheres 20.0
1812 Female, age 91, both hemispheres 17.9
2775 Male, age 80, right hemisphere 17.8
Olfactory tubercle
nTPM: 19.6
2856 Male, age 75, right hemisphere 23.2
1998 Female, age 91, both hemispheres 20.3
2487 Female, age 94, left hemisphere 17.7
1846 Male, age 80, right hemisphere 17.0
Putamen
nTPM: 22.6
2647 Male, age 75, left hemisphere 31.7
2482 Female, age 94, left hemisphere 25.9
2489 Female, age 72, unknown 23.2
1838 Male, age 80, right hemisphere 20.4
1829 Male, age 74, unknown 20.1
1937 Female, age 91, right hemisphere 20.1
2466 Female, age 79, unknown 17.2
Septal nuclei
nTPM: 20.1
2059 Female, age 85, both hemispheres 27.2
1960 Male, age 74, unknown 21.7
2199 Male, age 80, right hemisphere 19.6
2009 Female, age 91, both hemispheres 19.1
2394 Male, age 61, left hemisphere 19.1
2031 Female, age 72, unknown 17.3
2629 Female, age 94, right hemisphere 16.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.0
Samples: 246

Max nTPM: 103.9
Min nTPM: 1.2
Std nTPM: 13.7
Median nTPM: 22.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 103.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 72.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 67.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 65.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 64.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 61.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 58.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 57.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 56.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 56.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 54.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.5
Samples: 246

Max nTPM: 61.5
Min nTPM: 1.6
Std nTPM: 12.0
Median nTPM: 19.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 61.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 58.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 58.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 57.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 57.2
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 56.1
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 54.2
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 52.6
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 50.2
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 48.1
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 47.7
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Brain - Putamen (basal ganglia)
Average nTPM: 29.2
Samples: 205

Max nTPM: 87.7
Min nTPM: 1.6
Std nTPM: 15.1
Median nTPM: 26.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 87.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 80.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 73.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 72.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 71.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 66.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 66.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 62.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 59.6
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 58.3
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 56.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.6
FF:10164-103B2 76 years, female 2.6
Globus pallidus
Scaled Tags Per Million: 0.9
FF:10161-103A8 76 years, female 1.0
FF:10175-103C4 60 years, female 0.7
Nucleus accumbens
Scaled Tags Per Million: 2.2
FF:10037-101F1 23-56 years, mixed 2.2
Putamen
Scaled Tags Per Million: 2.1
FF:10176-103C5 60 years, female 2.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.5
Pig sample Sample description nTPM
Caudate
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 0.2
Sample D Male 0.0
Putamen
nTPM: 0.5
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.0
Sample A Female 1.5
Sample B Female 0.0
Sample C Male 0.3
Sample D Male 0.1
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.3
Sample B Female 0.1
Sample C Male 0.3
Sample D Male 0.0
Ventral pallidum
nTPM: 0.5
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.4
Sample C Male 1.3
Sample D Male 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.9
Samples: 4

Max nTPM: 17.3
Min nTPM: 14.9
Sample A Male 15.3
Sample B Male 17.3
Sample C Female 14.9
Sample D Female 16.1
Septum
nTPM: 10.7
Samples: 4

Max nTPM: 15.0
Min nTPM: 8.2
Sample A Male 8.2
Sample B Male 15.0
Sample C Female 9.7
Sample D Female 9.7
Ventral forebrain
nTPM: 15.3
Samples: 4

Max nTPM: 17.9
Min nTPM: 12.6
Sample A Male 15.7
Sample B Male 12.6
Sample C Female 17.9
Sample D Female 14.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
75888748 Antisense, RP_060502_01_A02, Mouse strain C57BL/6J (56 days, male) 1.8
75197492 Antisense, RP_060502_01_A02, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 1.5
75888748 Antisense, RP_060502_01_A02, Mouse strain C57BL/6J (56 days, male) 1.5
75197492 Antisense, RP_060502_01_A02, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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