MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:111.9 nTPM
HPA:111.9 nTPM
GTEx:110.5 nTPM
FANTOM5:46.9 Scaled Tags Per Million
Pig:98.2 nTPM
Mouse:41.0 nTPM
Allen mouse:13.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 111.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 99.0
2586 Male, age 75, left hemisphere 150.0
2828 Female, age 72, unknown 131.4
2666 Male, age 74, left hemisphere 119.7
1827 Male, age 72, unknown 101.5
2019 Male, age 18, unknown 91.0
1833 Male, age 53, unknown 86.7
1830 Male, age 51, unknown 82.0
1870 Female, age 42, unknown 78.2
2219 Male, age 76, both hemispheres 76.5
2411 Female, age 72, unknown 73.4
Dorsal raphe nucleus
nTPM: 86.8
1828 Male, age 53, unknown 106.7
2016 Female, age 72, unknown 101.2
2047 Male, age 72, unknown 92.4
2298 Female, age 72, unknown 75.7
2750 Male, age 76, both hemispheres 58.3
Inferior colliculus
nTPM: 111.9
1848 Female, age 42, unknown 121.1
2849 Male, age 72, unknown 118.3
1890 Male, age 53, unknown 111.5
2097 Female, age 72, unknown 96.7
Median raphe nucleus
nTPM: 80.2
2220 Male, age 76, midline 80.2
Pedunculopontine tegmental nucleus
nTPM: 72.2
2334 Male, age 80, both hemispheres 80.1
1921 Female, age 85, both hemispheres 77.4
2338 Male, age 61, both hemispheres 59.1
Periaquaductal grey, anterior
nTPM: 102.5
2502 Female, age 75, unknown 111.2
1795 Male, age 51, unknown 101.0
1947 Male, age 18, unknown 95.1
Periaquaductal grey, dorsal
nTPM: 94.3
1840 Male, age 53, unknown 103.7
2464 Female, age 72, unknown 95.1
2850 Male, age 76, both hemispheres 92.6
1831 Male, age 72, unknown 85.7
Periaquaductal grey, lateral
nTPM: 85.8
2140 Male, age 76, both hemispheres 92.7
2053 Male, age 18, unknown 89.5
2272 Male, age 74, both hemispheres 75.1
Pretectal area
nTPM: 94.1
1816 Male, age 51, unknown 120.1
1944 Female, age 72, unknown 117.7
1817 Female, age 42, unknown 112.8
1815 Male, age 53, unknown 98.9
2007 Male, age 72, unknown 97.5
2667 Female, age 75, unknown 88.1
2407 Male, age 75, both hemispheres 88.0
2825 Male, age 18, unknown 87.2
2316 Male, age 76, right hemisphere 78.6
2273 Male, age 74, both hemispheres 74.7
2224 Female, age 72, unknown 71.8
Red nucleus
nTPM: 95.2
2588 Male, age 74, left hemisphere 110.4
2503 Female, age 72, unknown 106.1
2725 Female, age 75, unknown 104.1
1954 Female, age 42, unknown 100.9
2769 Male, age 72, unknown 99.3
2227 Male, age 72, unknown 97.9
2823 Male, age 76, right hemisphere 96.3
1821 Female, age 72, unknown 91.0
2785 Male, age 18, unknown 87.6
1865 Male, age 51, unknown 85.4
1904 Male, age 53, unknown 82.1
2584 Male, age 75, left hemisphere 81.1
Substantia nigra
nTPM: 98.9
1916 Female, age 42, unknown 123.5
2699 Male, age 18, unknown 115.7
2665 Male, age 74, both hemispheres 111.0
2583 Male, age 75, right hemisphere 98.8
1851 Male, age 51, unknown 96.7
1889 Female, age 72, unknown 96.7
2590 Female, age 75, unknown 89.5
1941 Male, age 53, unknown 88.0
2241 Male, age 72, unknown 84.9
2409 Female, age 72, unknown 84.7
Superior colliculus
nTPM: 100.5
2664 Male, age 75, both hemispheres 142.5
2087 Female, age 72, unknown 116.0
2261 Male, age 18, unknown 103.8
1796 Male, age 53, unknown 99.9
2587 Male, age 74, left hemisphere 97.2
1839 Male, age 51, unknown 95.8
2668 Female, age 75, unknown 95.4
1995 Male, age 72, unknown 88.9
1913 Female, age 42, unknown 82.9
1895 Male, age 76, right hemisphere 82.7
Ventral tegmental area
nTPM: 84.3
1915 Female, age 42, unknown 96.2
1942 Male, age 51, unknown 88.9
2410 Female, age 72, unknown 87.2
2218 Male, age 76, both hemispheres 85.6
2021 Male, age 53, unknown 79.1
2223 Female, age 72, unknown 68.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 110.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 110.5
Samples: 139

Max nTPM: 237.5
Min nTPM: 25.3
Std nTPM: 44.1
Median nTPM: 106.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 237.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 235.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 224.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 211.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 191.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 190.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 186.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 184.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 182.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 180.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 175.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.9
FF:10158-103A5 76 years, female 46.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.2
Pig sample Sample description nTPM
Midbrain
nTPM: 68.8
Samples: 4

Max nTPM: 111.7
Min nTPM: 46.4
Sample A Female 46.4
Sample B Female 54.5
Sample C Male 111.7
Sample D Male 62.6
Periaqueductal gray
nTPM: 52.4
Samples: 3

Max nTPM: 63.1
Min nTPM: 43.0
Sample B Female 51.0
Sample C Male 63.1
Sample D Male 43.0
Substantia nigra
nTPM: 58.5
Samples: 4

Max nTPM: 75.0
Min nTPM: 45.6
Sample A Female 57.6
Sample B Female 45.6
Sample C Male 75.0
Sample D Male 55.6
Superior colliculi
nTPM: 98.2
Samples: 4

Max nTPM: 117.5
Min nTPM: 84.3
Sample A Female 84.3
Sample B Female 90.9
Sample C Male 117.5
Sample D Male 100.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.0
Samples: 4

Max nTPM: 45.7
Min nTPM: 36.8
Sample A Male 45.7
Sample B Male 36.8
Sample C Female 40.3
Sample D Female 41.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.6
76098306 Antisense, RP_060626_01_E08, Mouse strain C57BL/6J (56 days, male) 13.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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