BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA:11.7 nTPM
GTEx:10.4 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:20.2 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA019770
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.6
2289 Male, age 61, right hemisphere 3.1
2290 Female, age 72, unknown 1.1
1781 Male, age 74, unknown 0.7
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 7.7
2491 Male, age 75, both hemispheres 14.8
2568 Male, age 61, both hemispheres 14.1
2284 Female, age 91, both hemispheres 13.1
2645 Female, age 72, unknown 11.3
2198 Male, age 80, both hemispheres 8.5
1956 Male, age 74, unknown 3.5
2292 Female, age 85, both hemispheres 3.3
2392 Female, age 94, both hemispheres 1.2
2196 Female, age 79, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.1
1783 Male, age 74, unknown 1.1
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 10.2
2029 Male, age 61, right hemisphere 17.1
2775 Male, age 80, right hemisphere 13.3
2195 Female, age 85, both hemispheres 13.1
1812 Female, age 91, both hemispheres 7.2
1979 Male, age 74, unknown 0.6
Olfactory tubercle
nTPM: 11.7
1998 Female, age 91, both hemispheres 15.7
2487 Female, age 94, left hemisphere 14.9
2856 Male, age 75, right hemisphere 10.2
1846 Male, age 80, right hemisphere 6.0
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 8.8
1960 Male, age 74, unknown 20.0
2031 Female, age 72, unknown 14.6
2059 Female, age 85, both hemispheres 12.0
2629 Female, age 94, right hemisphere 8.2
2009 Female, age 91, both hemispheres 7.1
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.7
Samples: 246

Max nTPM: 16.2
Min nTPM: 1.8
Std nTPM: 3.2
Median nTPM: 8.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 16.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 15.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 15.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 15.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 15.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 15.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 15.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 15.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 14.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 14.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 14.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.4
Samples: 246

Max nTPM: 18.1
Min nTPM: 1.0
Std nTPM: 3.8
Median nTPM: 10.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 18.1
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 18.0
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 17.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 17.3
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 17.2
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 16.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 16.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 16.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 16.5
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 16.4
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 16.4
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Brain - Putamen (basal ganglia)
Average nTPM: 8.3
Samples: 205

Max nTPM: 15.5
Min nTPM: 2.2
Std nTPM: 3.0
Median nTPM: 8.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 15.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 15.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 14.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 14.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 14.7
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 14.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 14.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 14.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 14.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 13.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 13.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.1
FF:10164-103B2 76 years, female 31.1
Globus pallidus
Scaled Tags Per Million: 12.3
FF:10175-103C4 60 years, female 18.9
FF:10161-103A8 76 years, female 5.7
Nucleus accumbens
Scaled Tags Per Million: 43.7
FF:10037-101F1 23-56 years, mixed 43.7
Putamen
Scaled Tags Per Million: 28.0
FF:10176-103C5 60 years, female 28.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.6
Pig sample Sample description nTPM
Caudate
nTPM: 13.6
Samples: 4

Max nTPM: 16.3
Min nTPM: 9.1
Sample A Female 9.1
Sample B Female 16.3
Sample C Male 15.6
Sample D Male 13.5
Putamen
nTPM: 9.5
Samples: 4

Max nTPM: 10.5
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 9.9
Sample C Male 9.5
Sample D Male 10.5
Septum
nTPM: 9.7
Samples: 4

Max nTPM: 11.6
Min nTPM: 5.4
Sample A Female 10.6
Sample B Female 11.2
Sample C Male 11.6
Sample D Male 5.4
Ventral pallidum
nTPM: 10.7
Samples: 4

Max nTPM: 12.4
Min nTPM: 9.1
Sample A Female 11.1
Sample B Female 9.1
Sample C Male 12.4
Sample D Male 10.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 20.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.2
Samples: 4

Max nTPM: 27.0
Min nTPM: 13.8
Sample A Male 20.5
Sample B Male 27.0
Sample C Female 13.8
Sample D Female 19.6
Septum
nTPM: 16.7
Samples: 4

Max nTPM: 20.2
Min nTPM: 13.4
Sample A Male 20.2
Sample B Male 16.0
Sample C Female 17.0
Sample D Female 13.4
Ventral forebrain
nTPM: 20.0
Samples: 4

Max nTPM: 22.3
Min nTPM: 17.7
Sample A Male 22.3
Sample B Male 17.7
Sample C Female 21.2
Sample D Female 18.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
70528324 Antisense, RP_050623_02_D01, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
70528324 Antisense, RP_050623_02_D01, Mouse strain C57BL/6J (56 days, male) 0.1

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