MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1433.2 nTPM
HPA:1433.2 nTPM
GTEx:1817.9 nTPM
FANTOM5:120.7 Scaled Tags Per Million
Pig:247.9 nTPM
Mouse:1601.5 nTPM
Allen mouse:12.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1433.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1396.1
2666 Male, age 74, left hemisphere 1438.4
1870 Female, age 42, unknown 1418.3
1833 Male, age 53, unknown 1404.7
2411 Female, age 72, unknown 1402.4
1830 Male, age 51, unknown 1397.5
1827 Male, age 72, unknown 1394.8
2219 Male, age 76, both hemispheres 1392.1
2828 Female, age 72, unknown 1384.1
2019 Male, age 18, unknown 1371.0
2586 Male, age 75, left hemisphere 1357.6
Dorsal raphe nucleus
nTPM: 1382.4
2750 Male, age 76, both hemispheres 1416.1
2016 Female, age 72, unknown 1387.4
2298 Female, age 72, unknown 1386.7
1828 Male, age 53, unknown 1382.3
2047 Male, age 72, unknown 1339.4
Inferior colliculus
nTPM: 1402.2
2849 Male, age 72, unknown 1426.8
1890 Male, age 53, unknown 1401.9
2097 Female, age 72, unknown 1392.5
1848 Female, age 42, unknown 1387.4
Median raphe nucleus
nTPM: 1403.1
2220 Male, age 76, midline 1403.1
Pedunculopontine tegmental nucleus
nTPM: 1433.2
2338 Male, age 61, both hemispheres 1476.2
2334 Male, age 80, both hemispheres 1446.2
1921 Female, age 85, both hemispheres 1377.1
Periaquaductal grey, anterior
nTPM: 1388.3
2502 Female, age 75, unknown 1406.1
1795 Male, age 51, unknown 1379.8
1947 Male, age 18, unknown 1379.0
Periaquaductal grey, dorsal
nTPM: 1390.8
2850 Male, age 76, both hemispheres 1396.6
1831 Male, age 72, unknown 1393.8
1840 Male, age 53, unknown 1393.6
2464 Female, age 72, unknown 1379.0
Periaquaductal grey, lateral
nTPM: 1375.8
2053 Male, age 18, unknown 1391.6
2140 Male, age 76, both hemispheres 1373.1
2272 Male, age 74, both hemispheres 1362.6
Pretectal area
nTPM: 1390.3
1815 Male, age 53, unknown 1422.7
2825 Male, age 18, unknown 1413.3
1816 Male, age 51, unknown 1410.2
1817 Female, age 42, unknown 1409.4
2316 Male, age 76, right hemisphere 1397.4
2224 Female, age 72, unknown 1388.4
2007 Male, age 72, unknown 1385.3
1944 Female, age 72, unknown 1382.4
2667 Female, age 75, unknown 1371.5
2407 Male, age 75, both hemispheres 1363.2
2273 Male, age 74, both hemispheres 1350.0
Red nucleus
nTPM: 1418.8
2503 Female, age 72, unknown 1469.2
1821 Female, age 72, unknown 1451.8
2725 Female, age 75, unknown 1446.9
1865 Male, age 51, unknown 1433.2
2584 Male, age 75, left hemisphere 1422.8
2227 Male, age 72, unknown 1410.3
2588 Male, age 74, left hemisphere 1408.5
2823 Male, age 76, right hemisphere 1408.0
1904 Male, age 53, unknown 1405.8
2769 Male, age 72, unknown 1400.7
1954 Female, age 42, unknown 1386.0
2785 Male, age 18, unknown 1382.3
Substantia nigra
nTPM: 1425.6
2699 Male, age 18, unknown 1484.5
2665 Male, age 74, both hemispheres 1464.4
2241 Male, age 72, unknown 1458.8
2409 Female, age 72, unknown 1456.4
1851 Male, age 51, unknown 1450.8
1889 Female, age 72, unknown 1400.7
1916 Female, age 42, unknown 1399.7
2590 Female, age 75, unknown 1397.5
1941 Male, age 53, unknown 1380.3
2583 Male, age 75, right hemisphere 1363.0
Superior colliculus
nTPM: 1407.6
2587 Male, age 74, left hemisphere 1455.1
1913 Female, age 42, unknown 1445.6
1995 Male, age 72, unknown 1429.5
1796 Male, age 53, unknown 1406.8
2668 Female, age 75, unknown 1404.6
1895 Male, age 76, right hemisphere 1401.0
1839 Male, age 51, unknown 1395.1
2087 Female, age 72, unknown 1386.8
2261 Male, age 18, unknown 1386.3
2664 Male, age 75, both hemispheres 1365.7
Ventral tegmental area
nTPM: 1418.4
2223 Female, age 72, unknown 1467.5
1915 Female, age 42, unknown 1437.2
2021 Male, age 53, unknown 1420.0
2410 Female, age 72, unknown 1407.6
2218 Male, age 76, both hemispheres 1403.5
1942 Male, age 51, unknown 1374.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1817.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1817.9
Samples: 139

Max nTPM: 4784.8
Min nTPM: 682.1
Std nTPM: 694.1
Median nTPM: 1714.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4784.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4690.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4444.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4085.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 3120.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 3076.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3076.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3020.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2980.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2953.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 2910.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.7
FF:10158-103A5 76 years, female 120.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 247.9
Pig sample Sample description nTPM
Midbrain
nTPM: 221.5
Samples: 4

Max nTPM: 280.9
Min nTPM: 181.3
Sample A Female 280.9
Sample B Female 230.8
Sample C Male 193.1
Sample D Male 181.3
Periaqueductal gray
nTPM: 182.8
Samples: 3

Max nTPM: 196.1
Min nTPM: 173.0
Sample B Female 173.0
Sample C Male 196.1
Sample D Male 179.2
Substantia nigra
nTPM: 231.1
Samples: 4

Max nTPM: 298.7
Min nTPM: 175.7
Sample A Female 298.7
Sample B Female 226.9
Sample C Male 223.2
Sample D Male 175.7
Superior colliculi
nTPM: 247.9
Samples: 4

Max nTPM: 275.9
Min nTPM: 225.9
Sample A Female 275.9
Sample B Female 249.2
Sample C Male 240.7
Sample D Male 225.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1601.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 1601.5
Samples: 4

Max nTPM: 1667.7
Min nTPM: 1545.0
Sample A Male 1667.7
Sample B Male 1588.2
Sample C Female 1545.0
Sample D Female 1605.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
69816792 Antisense, RP_050510_01_H06, Mouse strain C57BL/6J (56 days, male) 12.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.