MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.4 nTPM
HPA:31.4 nTPM
GTEx:37.7 nTPM
FANTOM5:26.4 Scaled Tags Per Million
Pig:25.2 nTPM
Mouse:24.6 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.3
2219 Male, age 76, both hemispheres 33.4
2586 Male, age 75, left hemisphere 31.5
1827 Male, age 72, unknown 30.5
1833 Male, age 53, unknown 29.7
2828 Female, age 72, unknown 29.1
2666 Male, age 74, left hemisphere 29.0
2411 Female, age 72, unknown 28.9
2019 Male, age 18, unknown 28.6
1830 Male, age 51, unknown 26.0
1870 Female, age 42, unknown 25.8
Dorsal raphe nucleus
nTPM: 29.8
2047 Male, age 72, unknown 32.4
2298 Female, age 72, unknown 31.7
1828 Male, age 53, unknown 30.1
2750 Male, age 76, both hemispheres 28.1
2016 Female, age 72, unknown 26.8
Inferior colliculus
nTPM: 31.4
2849 Male, age 72, unknown 35.1
1848 Female, age 42, unknown 30.9
2097 Female, age 72, unknown 30.2
1890 Male, age 53, unknown 29.2
Median raphe nucleus
nTPM: 30.7
2220 Male, age 76, midline 30.7
Pedunculopontine tegmental nucleus
nTPM: 29.4
2334 Male, age 80, both hemispheres 33.0
1921 Female, age 85, both hemispheres 31.6
2338 Male, age 61, both hemispheres 23.5
Periaquaductal grey, anterior
nTPM: 29.8
1795 Male, age 51, unknown 30.5
1947 Male, age 18, unknown 30.3
2502 Female, age 75, unknown 28.7
Periaquaductal grey, dorsal
nTPM: 28.0
2464 Female, age 72, unknown 28.4
1840 Male, age 53, unknown 28.2
2850 Male, age 76, both hemispheres 28.0
1831 Male, age 72, unknown 27.5
Periaquaductal grey, lateral
nTPM: 26.7
2272 Male, age 74, both hemispheres 27.8
2140 Male, age 76, both hemispheres 26.5
2053 Male, age 18, unknown 25.9
Pretectal area
nTPM: 29.6
2667 Female, age 75, unknown 34.8
1816 Male, age 51, unknown 31.5
1944 Female, age 72, unknown 31.3
1817 Female, age 42, unknown 31.1
2007 Male, age 72, unknown 30.9
2825 Male, age 18, unknown 29.5
2224 Female, age 72, unknown 28.6
1815 Male, age 53, unknown 28.1
2316 Male, age 76, right hemisphere 27.0
2273 Male, age 74, both hemispheres 26.5
2407 Male, age 75, both hemispheres 26.4
Red nucleus
nTPM: 27.1
2725 Female, age 75, unknown 28.8
2588 Male, age 74, left hemisphere 28.0
2584 Male, age 75, left hemisphere 27.7
2769 Male, age 72, unknown 27.6
2823 Male, age 76, right hemisphere 27.3
1821 Female, age 72, unknown 27.2
1904 Male, age 53, unknown 27.2
1954 Female, age 42, unknown 27.2
2785 Male, age 18, unknown 27.0
2227 Male, age 72, unknown 26.7
2503 Female, age 72, unknown 25.6
1865 Male, age 51, unknown 24.7
Substantia nigra
nTPM: 30.3
1916 Female, age 42, unknown 40.3
2665 Male, age 74, both hemispheres 36.1
1851 Male, age 51, unknown 31.8
1941 Male, age 53, unknown 31.5
1889 Female, age 72, unknown 30.4
2699 Male, age 18, unknown 30.2
2241 Male, age 72, unknown 27.3
2409 Female, age 72, unknown 26.7
2583 Male, age 75, right hemisphere 25.4
2590 Female, age 75, unknown 23.0
Superior colliculus
nTPM: 27.8
1796 Male, age 53, unknown 30.7
2087 Female, age 72, unknown 29.8
2668 Female, age 75, unknown 29.8
1839 Male, age 51, unknown 29.7
1895 Male, age 76, right hemisphere 29.0
2261 Male, age 18, unknown 28.3
2664 Male, age 75, both hemispheres 27.3
2587 Male, age 74, left hemisphere 26.8
1913 Female, age 42, unknown 23.5
1995 Male, age 72, unknown 23.0
Ventral tegmental area
nTPM: 30.3
2218 Male, age 76, both hemispheres 34.4
1915 Female, age 42, unknown 32.9
2410 Female, age 72, unknown 31.7
1942 Male, age 51, unknown 29.6
2021 Male, age 53, unknown 27.7
2223 Female, age 72, unknown 25.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.7
Samples: 139

Max nTPM: 71.3
Min nTPM: 16.6
Std nTPM: 10.3
Median nTPM: 36.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 71.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 68.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 63.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 59.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 59.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 57.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 55.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 55.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 54.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 54.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 53.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.4
FF:10158-103A5 76 years, female 26.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.2
Pig sample Sample description nTPM
Midbrain
nTPM: 25.2
Samples: 4

Max nTPM: 28.1
Min nTPM: 21.8
Sample A Female 25.4
Sample B Female 21.8
Sample C Male 25.4
Sample D Male 28.1
Periaqueductal gray
nTPM: 19.9
Samples: 3

Max nTPM: 24.5
Min nTPM: 17.0
Sample B Female 17.0
Sample C Male 24.5
Sample D Male 18.3
Substantia nigra
nTPM: 21.0
Samples: 4

Max nTPM: 29.4
Min nTPM: 13.6
Sample A Female 29.4
Sample B Female 13.6
Sample C Male 26.2
Sample D Male 14.6
Superior colliculi
nTPM: 24.3
Samples: 4

Max nTPM: 30.8
Min nTPM: 14.9
Sample A Female 30.8
Sample B Female 14.9
Sample C Male 24.7
Sample D Male 26.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.6
Samples: 4

Max nTPM: 32.1
Min nTPM: 20.2
Sample A Male 32.1
Sample B Male 20.7
Sample C Female 20.2
Sample D Female 25.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
68632008 Antisense, RP_050125_01_E07, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.