MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:148.2 nTPM
HPA:148.2 nTPM
GTEx:233.2 nTPM
FANTOM5:21.2 Scaled Tags Per Million
Pig:180.1 nTPM
Mouse:161.4 nTPM
Allen mouse:6.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 148.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.1
2219 Male, age 76, both hemispheres 159.4
1827 Male, age 72, unknown 120.0
2666 Male, age 74, left hemisphere 114.9
2828 Female, age 72, unknown 109.6
2411 Female, age 72, unknown 109.4
2019 Male, age 18, unknown 106.0
1833 Male, age 53, unknown 101.3
2586 Male, age 75, left hemisphere 99.6
1870 Female, age 42, unknown 97.2
1830 Male, age 51, unknown 93.2
Dorsal raphe nucleus
nTPM: 106.5
2298 Female, age 72, unknown 122.5
2750 Male, age 76, both hemispheres 114.9
2047 Male, age 72, unknown 112.8
1828 Male, age 53, unknown 99.3
2016 Female, age 72, unknown 83.1
Inferior colliculus
nTPM: 112.8
2097 Female, age 72, unknown 125.7
1890 Male, age 53, unknown 111.6
1848 Female, age 42, unknown 108.2
2849 Male, age 72, unknown 105.9
Median raphe nucleus
nTPM: 144.0
2220 Male, age 76, midline 144.0
Pedunculopontine tegmental nucleus
nTPM: 122.8
1921 Female, age 85, both hemispheres 133.4
2334 Male, age 80, both hemispheres 129.1
2338 Male, age 61, both hemispheres 105.7
Periaquaductal grey, anterior
nTPM: 122.3
2502 Female, age 75, unknown 125.7
1795 Male, age 51, unknown 123.6
1947 Male, age 18, unknown 117.7
Periaquaductal grey, dorsal
nTPM: 104.8
2850 Male, age 76, both hemispheres 112.8
1831 Male, age 72, unknown 106.6
1840 Male, age 53, unknown 103.9
2464 Female, age 72, unknown 95.9
Periaquaductal grey, lateral
nTPM: 94.8
2053 Male, age 18, unknown 102.1
2140 Male, age 76, both hemispheres 93.0
2272 Male, age 74, both hemispheres 89.4
Pretectal area
nTPM: 124.6
1816 Male, age 51, unknown 161.3
1817 Female, age 42, unknown 153.6
1944 Female, age 72, unknown 151.8
2667 Female, age 75, unknown 143.5
1815 Male, age 53, unknown 142.1
2007 Male, age 72, unknown 132.3
2224 Female, age 72, unknown 114.2
2825 Male, age 18, unknown 106.1
2316 Male, age 76, right hemisphere 89.5
2407 Male, age 75, both hemispheres 89.0
2273 Male, age 74, both hemispheres 86.6
Red nucleus
nTPM: 104.9
1821 Female, age 72, unknown 117.7
2725 Female, age 75, unknown 111.1
1954 Female, age 42, unknown 107.7
2785 Male, age 18, unknown 106.0
1904 Male, age 53, unknown 105.9
2823 Male, age 76, right hemisphere 105.3
2584 Male, age 75, left hemisphere 105.2
1865 Male, age 51, unknown 103.4
2588 Male, age 74, left hemisphere 101.5
2227 Male, age 72, unknown 99.4
2769 Male, age 72, unknown 98.4
2503 Female, age 72, unknown 97.7
Substantia nigra
nTPM: 148.2
1916 Female, age 42, unknown 203.8
2665 Male, age 74, both hemispheres 168.3
1851 Male, age 51, unknown 161.6
1941 Male, age 53, unknown 157.5
2241 Male, age 72, unknown 154.1
1889 Female, age 72, unknown 149.7
2409 Female, age 72, unknown 137.1
2699 Male, age 18, unknown 136.4
2590 Female, age 75, unknown 116.2
2583 Male, age 75, right hemisphere 97.7
Superior colliculus
nTPM: 109.7
2087 Female, age 72, unknown 139.6
1895 Male, age 76, right hemisphere 123.2
1796 Male, age 53, unknown 122.9
2261 Male, age 18, unknown 120.8
1913 Female, age 42, unknown 103.8
1839 Male, age 51, unknown 101.5
2668 Female, age 75, unknown 101.1
2587 Male, age 74, left hemisphere 98.5
1995 Male, age 72, unknown 92.8
2664 Male, age 75, both hemispheres 92.5
Ventral tegmental area
nTPM: 134.2
2218 Male, age 76, both hemispheres 182.5
2410 Female, age 72, unknown 153.8
1915 Female, age 42, unknown 145.8
1942 Male, age 51, unknown 114.2
2223 Female, age 72, unknown 107.3
2021 Male, age 53, unknown 101.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 233.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 233.2
Samples: 139

Max nTPM: 869.6
Min nTPM: 21.2
Std nTPM: 194.7
Median nTPM: 184.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 869.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 863.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 805.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 796.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 741.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 732.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 681.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 597.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 582.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 582.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 577.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.2
FF:10158-103A5 76 years, female 21.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 180.1
Pig sample Sample description nTPM
Midbrain
nTPM: 138.6
Samples: 4

Max nTPM: 208.4
Min nTPM: 32.8
Sample A Female 32.8
Sample B Female 123.7
Sample C Male 208.4
Sample D Male 189.3
Periaqueductal gray
nTPM: 112.6
Samples: 3

Max nTPM: 169.3
Min nTPM: 78.6
Sample B Female 78.6
Sample C Male 169.3
Sample D Male 89.8
Substantia nigra
nTPM: 180.2
Samples: 4

Max nTPM: 296.9
Min nTPM: 38.0
Sample A Female 296.9
Sample B Female 113.5
Sample C Male 272.2
Sample D Male 38.0
Superior colliculi
nTPM: 148.5
Samples: 4

Max nTPM: 182.6
Min nTPM: 87.1
Sample A Female 182.6
Sample B Female 87.1
Sample C Male 169.9
Sample D Male 154.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 161.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 161.4
Samples: 4

Max nTPM: 175.2
Min nTPM: 148.5
Sample A Male 175.2
Sample B Male 163.5
Sample C Female 158.2
Sample D Female 148.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
1210 Antisense, RP_040324_01_E03, Mouse strain C57BL/6J (56 days, male) 6.0
1209 Antisense, RP_040324_01_E03, Mouse strain C57BL/6J (56 days, male) 3.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.