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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:93.9 nTPM
HPA:93.9 nTPM
GTEx:86.8 nTPM
FANTOM5:199.2 Scaled Tags Per Million
Pig:109.5 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 93.9
Sample id Sample description nTPM
Amygdala
nTPM: 93.9
2514 Male, age 75, right hemisphere 109.6
1987 Female, age 91, left hemisphere 96.0
2695 Female, age 67, right hemisphere 88.9
2517 Female, age 94, left hemisphere 87.5
2814 Male, age 76, right hemisphere 87.5
Basal amygdala
nTPM: 77.7
2609 Male, age 75, right hemisphere 107.4
1955 Male, age 76, both hemispheres 80.2
2110 Male, age 80, left hemisphere 77.0
2243 Female, age 91, right hemisphere 77.0
2685 Female, age 94, left hemisphere 72.8
2827 Female, age 67, right hemisphere 51.5
Central amygdala
nTPM: 83.7
1905 Male, age 76, both hemispheres 97.6
2515 Male, age 75, right hemisphere 92.9
2239 Male, age 80, left hemisphere 76.8
2826 Female, age 94, left hemisphere 76.0
2701 Female, age 91, right hemisphere 74.8
Corticomedial amygdala
nTPM: 81.0
2428 Male, age 75, right hemisphere 108.9
2242 Female, age 91, right hemisphere 85.0
2829 Male, age 80, left hemisphere 80.7
2429 Female, age 94, left hemisphere 80.1
2240 Male, age 76, both hemispheres 75.2
2535 Female, age 67, right hemisphere 55.7
Lateral amygdala
nTPM: 78.1
2516 Male, age 75, right hemisphere 105.5
1883 Male, age 76, both hemispheres 84.9
2255 Female, age 91, right hemisphere 78.7
2256 Male, age 80, left hemisphere 74.4
2534 Female, age 94, left hemisphere 73.6
2830 Female, age 67, right hemisphere 51.4
Stria terminalis, bed nucleus
nTPM: 73.3
2201 Male, age 74, unknown 79.1
2486 Female, age 94, both hemispheres 71.4
1974 Female, age 91, both hemispheres 69.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 86.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 86.8
Samples: 152

Max nTPM: 213.4
Min nTPM: 13.8
Std nTPM: 41.8
Median nTPM: 82.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 213.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 212.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 178.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 177.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 175.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 173.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 171.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 167.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 165.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 162.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 161.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 160.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 159.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 148.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 143.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 141.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 138.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 138.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 136.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 134.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 133.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 131.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 130.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 129.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 129.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 128.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 127.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 126.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 126.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 124.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 124.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 122.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 119.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 116.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 115.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 114.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 113.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 113.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 113.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 113.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 112.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 112.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 110.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 108.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 108.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 108.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 105.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 103.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 103.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 102.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 100.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 100.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 99.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 99.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 97.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 96.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 95.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 94.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 93.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 92.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 91.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 90.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 90.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 87.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 87.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 86.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 86.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 86.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 86.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 85.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 85.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 84.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 84.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 83.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 83.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 83.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 81.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 81.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 80.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 80.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 80.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 79.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 78.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 78.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 77.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 77.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 75.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 74.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 72.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 69.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 69.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 68.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 66.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 66.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 66.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 66.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 64.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 64.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 64.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 63.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 62.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 62.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 60.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 60.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 60.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 59.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 59.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 59.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 58.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 58.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 58.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 58.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 57.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 57.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 55.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 55.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 53.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 52.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 51.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 48.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 47.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 46.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 45.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 45.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 44.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 44.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 44.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 43.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 43.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 42.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 42.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 42.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 39.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 39.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 39.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 39.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 38.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 38.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 37.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 35.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 35.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 34.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 33.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 33.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 28.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 28.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 25.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 25.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 23.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 21.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 16.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 13.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 199.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 199.2
FF:10151-102I7 76 years, female 199.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 109.5
Pig sample Sample description nTPM
Amygdala
nTPM: 109.6
Samples: 4

Max nTPM: 116.6
Min nTPM: 102.1
Sample A Female 114.3
Sample B Female 102.1
Sample C Male 116.6
Sample D Male 105.2

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