MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.0 nTPM
HPA:24.0 nTPM
GTEx:32.0 nTPM
FANTOM5:36.2 Scaled Tags Per Million
Pig:1.0 nTPM
Mouse:0.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.4
1870 Female, age 42, unknown 24.7
2411 Female, age 72, unknown 23.6
1830 Male, age 51, unknown 23.2
1833 Male, age 53, unknown 23.0
2019 Male, age 18, unknown 21.8
2828 Female, age 72, unknown 20.1
2219 Male, age 76, both hemispheres 19.7
1827 Male, age 72, unknown 19.4
2586 Male, age 75, left hemisphere 19.2
2666 Male, age 74, left hemisphere 19.1
Dorsal raphe nucleus
nTPM: 19.6
2750 Male, age 76, both hemispheres 22.8
2016 Female, age 72, unknown 19.6
1828 Male, age 53, unknown 19.3
2298 Female, age 72, unknown 18.4
2047 Male, age 72, unknown 18.0
Inferior colliculus
nTPM: 19.4
1848 Female, age 42, unknown 19.5
1890 Male, age 53, unknown 19.5
2097 Female, age 72, unknown 19.5
2849 Male, age 72, unknown 19.0
Median raphe nucleus
nTPM: 18.1
2220 Male, age 76, midline 18.1
Pedunculopontine tegmental nucleus
nTPM: 20.5
2338 Male, age 61, both hemispheres 21.3
2334 Male, age 80, both hemispheres 20.3
1921 Female, age 85, both hemispheres 19.8
Periaquaductal grey, anterior
nTPM: 19.0
2502 Female, age 75, unknown 19.7
1947 Male, age 18, unknown 19.0
1795 Male, age 51, unknown 18.1
Periaquaductal grey, dorsal
nTPM: 18.5
2464 Female, age 72, unknown 20.1
1831 Male, age 72, unknown 18.9
2850 Male, age 76, both hemispheres 17.7
1840 Male, age 53, unknown 17.3
Periaquaductal grey, lateral
nTPM: 18.8
2272 Male, age 74, both hemispheres 19.3
2053 Male, age 18, unknown 19.1
2140 Male, age 76, both hemispheres 17.9
Pretectal area
nTPM: 19.4
1815 Male, age 53, unknown 21.2
2316 Male, age 76, right hemisphere 20.9
2407 Male, age 75, both hemispheres 19.9
2273 Male, age 74, both hemispheres 19.6
2007 Male, age 72, unknown 19.5
1817 Female, age 42, unknown 19.4
2825 Male, age 18, unknown 19.4
2667 Female, age 75, unknown 18.8
2224 Female, age 72, unknown 18.5
1944 Female, age 72, unknown 18.0
1816 Male, age 51, unknown 17.7
Red nucleus
nTPM: 24.0
1904 Male, age 53, unknown 27.6
1865 Male, age 51, unknown 26.9
2823 Male, age 76, right hemisphere 25.5
1821 Female, age 72, unknown 25.1
1954 Female, age 42, unknown 25.1
2227 Male, age 72, unknown 25.0
2503 Female, age 72, unknown 25.0
2769 Male, age 72, unknown 24.6
2785 Male, age 18, unknown 23.0
2725 Female, age 75, unknown 20.9
2588 Male, age 74, left hemisphere 20.8
2584 Male, age 75, left hemisphere 18.9
Substantia nigra
nTPM: 19.7
2590 Female, age 75, unknown 21.2
1851 Male, age 51, unknown 20.9
2583 Male, age 75, right hemisphere 20.5
1889 Female, age 72, unknown 20.1
2409 Female, age 72, unknown 20.0
2699 Male, age 18, unknown 19.9
1941 Male, age 53, unknown 18.8
2241 Male, age 72, unknown 18.8
1916 Female, age 42, unknown 18.7
2665 Male, age 74, both hemispheres 18.4
Superior colliculus
nTPM: 20.6
1913 Female, age 42, unknown 24.0
1995 Male, age 72, unknown 23.9
1895 Male, age 76, right hemisphere 21.7
2587 Male, age 74, left hemisphere 21.1
1839 Male, age 51, unknown 20.2
2668 Female, age 75, unknown 19.9
1796 Male, age 53, unknown 19.4
2261 Male, age 18, unknown 18.8
2664 Male, age 75, both hemispheres 18.7
2087 Female, age 72, unknown 18.3
Ventral tegmental area
nTPM: 20.2
2410 Female, age 72, unknown 21.9
2223 Female, age 72, unknown 21.1
1915 Female, age 42, unknown 20.4
1942 Male, age 51, unknown 19.6
2218 Male, age 76, both hemispheres 19.3
2021 Male, age 53, unknown 19.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.0
Samples: 139

Max nTPM: 142.3
Min nTPM: 5.1
Std nTPM: 22.0
Median nTPM: 25.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 142.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 125.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 110.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 80.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 79.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 76.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 71.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 69.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 68.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 67.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 67.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.2
FF:10158-103A5 76 years, female 36.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.0
Pig sample Sample description nTPM
Midbrain
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Female 0.4
Sample B Female 0.5
Sample C Male 0.7
Sample D Male 0.3
Periaqueductal gray
nTPM: 1.0
Samples: 3

Max nTPM: 1.1
Min nTPM: 0.8
Sample B Female 0.8
Sample C Male 1.1
Sample D Male 1.0
Substantia nigra
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.9
Superior colliculi
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.5
Sample C Male 0.7
Sample D Male 0.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.1
Sample D Female 0.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68545057 Antisense, RP_050118_02_H01, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.