BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.8 nTPM
HPA:37.8 nTPM
GTEx:42.7 nTPM
FANTOM5:28.3 Scaled Tags Per Million
Pig:15.4 nTPM
Mouse:15.4 nTPM
Allen mouse:1.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA010844
Glial cells Low
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.8
2481 Female, age 94, left hemisphere 49.8
2290 Female, age 72, unknown 40.4
2289 Male, age 61, right hemisphere 38.8
1857 Female, age 85, left hemisphere 37.8
2288 Male, age 75, left hemisphere 35.8
2846 Female, age 79, unknown 34.4
1781 Male, age 74, unknown 34.0
1854 Male, age 80, left hemisphere 31.1
Claustrum
nTPM: 32.6
2292 Female, age 85, both hemispheres 35.4
2645 Female, age 72, unknown 34.5
2284 Female, age 91, both hemispheres 34.2
2196 Female, age 79, unknown 32.9
2491 Male, age 75, both hemispheres 32.1
2568 Male, age 61, both hemispheres 31.9
2198 Male, age 80, both hemispheres 31.5
2392 Female, age 94, both hemispheres 31.3
1956 Male, age 74, unknown 29.8
Globus pallidus, externus
nTPM: 36.4
2646 Male, age 61, right hemisphere 41.4
1996 Male, age 80, right hemisphere 37.5
2772 Female, age 79, unknown 35.3
2395 Male, age 75, both hemispheres 34.1
2567 Female, age 72, unknown 33.8
Globus pallidus, internus
nTPM: 36.0
2483 Female, age 94, right hemisphere 44.8
2037 Male, age 80, right hemisphere 37.7
1818 Male, age 74, unknown 36.4
2778 Female, age 91, both hemispheres 34.3
2566 Female, age 72, unknown 34.0
2111 Female, age 85, right hemisphere 32.8
2287 Male, age 75, right hemisphere 31.8
Nucleus accumbens
nTPM: 34.4
2391 Female, age 94, left hemisphere 37.4
2286 Male, age 75, left hemisphere 37.1
2732 Male, age 80, right hemisphere 34.7
1806 Female, age 85, left hemisphere 34.5
1783 Male, age 74, unknown 33.7
1856 Female, age 91, right hemisphere 33.1
2698 Female, age 72, unknown 32.7
2824 Male, age 61, right hemisphere 32.1
Nucleus basalis of Meynert
nTPM: 37.2
2569 Male, age 61, both hemispheres 44.7
2484 Female, age 94, left hemisphere 37.1
2393 Male, age 80, right hemisphere 33.9
2821 Male, age 75, both hemispheres 33.3
Nucleus of the diagonal band
nTPM: 29.3
1812 Female, age 91, both hemispheres 31.3
1979 Male, age 74, unknown 31.2
2775 Male, age 80, right hemisphere 30.3
2195 Female, age 85, both hemispheres 28.1
2029 Male, age 61, right hemisphere 25.5
Olfactory tubercle
nTPM: 29.7
1846 Male, age 80, right hemisphere 33.7
1998 Female, age 91, both hemispheres 28.7
2487 Female, age 94, left hemisphere 28.2
2856 Male, age 75, right hemisphere 28.2
Putamen
nTPM: 34.8
2482 Female, age 94, left hemisphere 42.0
2647 Male, age 75, left hemisphere 37.1
2489 Female, age 72, unknown 35.5
2466 Female, age 79, unknown 34.4
1937 Female, age 91, right hemisphere 33.9
1829 Male, age 74, unknown 30.7
1838 Male, age 80, right hemisphere 30.0
Septal nuclei
nTPM: 30.2
2199 Male, age 80, right hemisphere 32.7
2009 Female, age 91, both hemispheres 31.3
2059 Female, age 85, both hemispheres 30.9
2394 Male, age 61, left hemisphere 30.8
2031 Female, age 72, unknown 29.4
2629 Female, age 94, right hemisphere 28.3
1960 Male, age 74, unknown 28.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.7
Samples: 246

Max nTPM: 150.8
Min nTPM: 10.7
Std nTPM: 21.3
Median nTPM: 36.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 150.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 130.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 118.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 108.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 107.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 100.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 100.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 90.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 88.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 86.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 86.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.5
Samples: 246

Max nTPM: 193.9
Min nTPM: 12.4
Std nTPM: 27.1
Median nTPM: 30.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 193.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 170.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 167.4
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 123.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 121.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 115.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 111.4
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 106.1
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 106.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 101.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 99.0
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Brain - Putamen (basal ganglia)
Average nTPM: 38.6
Samples: 205

Max nTPM: 132.6
Min nTPM: 12.3
Std nTPM: 19.1
Median nTPM: 33.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 132.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 109.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 102.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 100.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 100.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 92.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 90.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 77.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 77.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 75.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 74.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.3
FF:10164-103B2 76 years, female 28.3
Globus pallidus
Scaled Tags Per Million: 18.8
FF:10175-103C4 60 years, female 18.9
FF:10161-103A8 76 years, female 18.7
Nucleus accumbens
Scaled Tags Per Million: 13.5
FF:10037-101F1 23-56 years, mixed 13.5
Putamen
Scaled Tags Per Million: 15.4
FF:10176-103C5 60 years, female 15.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.4
Pig sample Sample description nTPM
Caudate
nTPM: 15.2
Samples: 4

Max nTPM: 18.0
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 14.5
Sample C Male 18.0
Sample D Male 14.6
Putamen
nTPM: 15.3
Samples: 4

Max nTPM: 16.6
Min nTPM: 12.6
Sample A Female 15.9
Sample B Female 12.6
Sample C Male 16.6
Sample D Male 16.0
Septum
nTPM: 15.4
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.1
Sample A Female 17.7
Sample B Female 14.5
Sample C Male 16.3
Sample D Male 13.1
Ventral pallidum
nTPM: 14.4
Samples: 4

Max nTPM: 17.2
Min nTPM: 12.3
Sample A Female 12.3
Sample B Female 17.2
Sample C Male 15.4
Sample D Male 12.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.1
Samples: 4

Max nTPM: 17.1
Min nTPM: 12.7
Sample A Male 12.7
Sample B Male 12.9
Sample C Female 17.1
Sample D Female 13.7
Septum
nTPM: 10.8
Samples: 4

Max nTPM: 12.7
Min nTPM: 7.7
Sample A Male 12.7
Sample B Male 10.4
Sample C Female 12.3
Sample D Female 7.7
Ventral forebrain
nTPM: 15.4
Samples: 4

Max nTPM: 20.1
Min nTPM: 11.4
Sample A Male 15.4
Sample B Male 11.4
Sample C Female 20.1
Sample D Female 14.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
100142543 Antisense, RP_110421_01_A03, Mouse strain C57BL/6J (56 days, male) 1.2
112650553 Antisense, RP_110421_01_A03, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.5
100142543 Antisense, RP_110421_01_A03, Mouse strain C57BL/6J (56 days, male) 0.5
112650553 Antisense, RP_110421_01_A03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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