We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
OMA1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • OMA1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:15.1 nTPM
HPA:15.1 nTPM
GTEx:7.0 nTPM
FANTOM5:20.2 Scaled Tags Per Million
Pig:2.1 nTPM
Mouse:6.9 nTPM
Allen mouse:1.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 15.1
Sample id Sample description nTPM
Amygdala
nTPM: 14.9
2695 Female, age 67, right hemisphere 17.8
2814 Male, age 76, right hemisphere 16.5
2514 Male, age 75, right hemisphere 15.4
2517 Female, age 94, left hemisphere 13.5
1987 Female, age 91, left hemisphere 11.3
Basal amygdala
nTPM: 13.2
2827 Female, age 67, right hemisphere 16.5
2685 Female, age 94, left hemisphere 13.9
2609 Male, age 75, right hemisphere 13.8
1955 Male, age 76, both hemispheres 13.7
2110 Male, age 80, left hemisphere 11.6
2243 Female, age 91, right hemisphere 10.0
Central amygdala
nTPM: 14.7
2826 Female, age 94, left hemisphere 18.3
1905 Male, age 76, both hemispheres 15.9
2701 Female, age 91, right hemisphere 14.3
2515 Male, age 75, right hemisphere 13.5
2239 Male, age 80, left hemisphere 11.4
Corticomedial amygdala
nTPM: 12.3
2240 Male, age 76, both hemispheres 14.3
2428 Male, age 75, right hemisphere 13.2
2429 Female, age 94, left hemisphere 12.5
2535 Female, age 67, right hemisphere 12.5
2829 Male, age 80, left hemisphere 10.8
2242 Female, age 91, right hemisphere 10.3
Lateral amygdala
nTPM: 15.1
2830 Female, age 67, right hemisphere 18.7
2516 Male, age 75, right hemisphere 18.1
2534 Female, age 94, left hemisphere 14.6
1883 Male, age 76, both hemispheres 13.9
2256 Male, age 80, left hemisphere 12.8
2255 Female, age 91, right hemisphere 12.6
Stria terminalis, bed nucleus
nTPM: 11.6
2201 Male, age 74, unknown 12.7
1974 Female, age 91, both hemispheres 11.5
2486 Female, age 94, both hemispheres 10.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 7.0
Samples: 152

Max nTPM: 16.8
Min nTPM: 2.9
Std nTPM: 1.8
Median nTPM: 6.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 16.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 12.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 11.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 10.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 10.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 10.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 10.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 10.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 9.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 9.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 9.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 9.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 9.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 9.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 9.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 9.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 9.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 9.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 9.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 9.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 8.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 8.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 8.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 8.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 8.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 8.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 8.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 8.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 8.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 8.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 8.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 8.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 8.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 8.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 8.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 8.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 8.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 8.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 8.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 8.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 8.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 8.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 8.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 7.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 7.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 7.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 7.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 7.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 7.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 7.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 7.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 7.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 7.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 7.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 7.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 7.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 7.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 7.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 7.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 7.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 7.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 7.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 7.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 7.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 7.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 7.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 7.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 7.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 6.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 6.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 6.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 6.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 6.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 6.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 6.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 6.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 6.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 6.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 6.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 6.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 6.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 6.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 6.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 6.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 6.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 6.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 6.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 6.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 6.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 6.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 6.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 6.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 6.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 6.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 6.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 6.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 6.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 6.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 6.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 6.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 6.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 6.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 6.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 6.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 6.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 6.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 6.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 6.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 6.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 6.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 6.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 6.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 6.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 5.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 5.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 5.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 5.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 5.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 5.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 5.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 5.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 5.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 5.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 5.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 5.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 5.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 5.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 5.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 5.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 5.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 5.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 5.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 5.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 5.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 5.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 5.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 5.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 4.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 4.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 4.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 4.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 4.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 4.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 4.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 4.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 3.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 3.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 3.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 20.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 20.2
FF:10151-102I7 76 years, female 20.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2.1
Pig sample Sample description nTPM
Amygdala
nTPM: 2.1
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 2.1
Sample C Male 1.9
Sample D Male 2.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 6.9
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.3
Sample A Male 6.9
Sample B Male 6.3
Sample C Female 7.8
Sample D Female 6.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.6
68342330 Antisense, RP_041214_01_B08, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.