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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:24.0 nTPM
HPA:24.0 nTPM
GTEx:60.9 nTPM
FANTOM5:135.5 Scaled Tags Per Million
Pig:56.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 24.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 18.5
1981 Female, age 72, midline 23.9
2816 Male, age 47, midline 19.6
2194 Female, age 79, both hemispheres 19.1
2048 Male, age 55, midline 16.3
2565 Male, age 75, midline 13.5
Cervical spinal cord, dorsal horn
nTPM: 24.0
2296 Male, age 66, both hemispheres 31.7
2173 Female, age 72, unknown 31.4
2069 Male, age 47, both hemispheres 27.8
1877 Male, age 55, unknown 20.8
2721 Male, age 90, both hemispheres 16.4
2297 Male, age 75, both hemispheres 15.7
Cervical spinal cord, ventral horn
nTPM: 23.2
2098 Female, age 72, unknown 34.0
2809 Male, age 90, both hemispheres 25.0
2068 Male, age 55, unknown 23.1
2480 Male, age 75, both hemispheres 21.4
2295 Male, age 66, both hemispheres 20.9
2820 Female, age 79, both hemispheres 14.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 60.9
Samples: 159

Max nTPM: 125.5
Min nTPM: 17.6
Std nTPM: 19.8
Median nTPM: 60.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 125.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 109.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 104.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 101.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 99.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 97.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 97.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 95.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 95.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 94.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 93.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 92.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 90.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 89.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 86.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 86.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 85.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 85.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 85.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 84.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 84.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 83.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 82.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 82.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 81.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 81.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 79.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 79.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 78.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 77.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 77.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 77.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 77.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 77.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 76.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 76.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 75.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 75.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 75.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 72.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 72.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 72.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 71.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 71.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 71.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 70.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 70.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 70.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 69.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 69.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 69.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 69.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 69.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 68.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 68.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 68.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 68.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 67.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 67.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 67.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 67.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 66.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 66.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 65.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 64.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 64.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 64.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 64.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 64.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 63.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 63.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 63.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 63.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 62.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 61.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 61.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 61.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 60.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 60.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 60.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 60.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 59.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 59.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 59.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 58.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 58.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 58.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 58.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 58.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 58.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 56.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 56.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 54.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 54.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 54.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 53.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 53.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 53.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 53.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 53.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 52.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 52.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 52.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 52.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 52.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 52.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 52.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 52.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 52.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 51.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 51.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 51.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 51.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 50.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 49.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 49.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 48.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 47.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 47.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 47.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 47.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 46.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 46.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 45.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 45.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 44.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 44.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 43.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 43.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 42.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 41.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 40.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 39.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 39.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 39.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 38.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 38.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 38.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 38.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 38.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 37.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 34.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 34.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 34.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 33.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 33.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 32.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 30.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 30.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 30.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 29.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 29.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 28.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 28.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 25.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 23.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 22.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 21.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 17.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 135.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 135.5
FF:10159-103A6 76 years, female 145.8
FF:10181-103D1 60 years, female 125.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 56.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 52.8
Samples: 4

Max nTPM: 66.0
Min nTPM: 42.5
Sample A Female 42.5
Sample B Female 56.7
Sample C Male 66.0
Sample D Male 46.0
Ventral spinal cord
nTPM: 56.9
Samples: 4

Max nTPM: 71.2
Min nTPM: 48.0
Sample A Female 48.0
Sample B Female 57.6
Sample C Male 50.8
Sample D Male 71.2

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