MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:97.8 nTPM
HPA:97.8 nTPM
GTEx:87.6 nTPM
FANTOM5:122.4 Scaled Tags Per Million
Pig:69.6 nTPM
Mouse:75.6 nTPM
Allen mouse:12.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.0
2411 Female, age 72, unknown 104.4
1833 Male, age 53, unknown 93.0
1870 Female, age 42, unknown 92.8
1830 Male, age 51, unknown 90.1
2828 Female, age 72, unknown 88.5
2019 Male, age 18, unknown 87.0
1827 Male, age 72, unknown 86.2
2586 Male, age 75, left hemisphere 85.9
2219 Male, age 76, both hemispheres 82.0
2666 Male, age 74, left hemisphere 80.4
Dorsal raphe nucleus
nTPM: 72.8
2750 Male, age 76, both hemispheres 96.1
2298 Female, age 72, unknown 70.0
1828 Male, age 53, unknown 67.6
2047 Male, age 72, unknown 65.7
2016 Female, age 72, unknown 64.8
Inferior colliculus
nTPM: 79.5
2097 Female, age 72, unknown 86.0
1890 Male, age 53, unknown 79.5
2849 Male, age 72, unknown 77.7
1848 Female, age 42, unknown 74.6
Median raphe nucleus
nTPM: 73.4
2220 Male, age 76, midline 73.4
Pedunculopontine tegmental nucleus
nTPM: 78.7
1921 Female, age 85, both hemispheres 84.5
2334 Male, age 80, both hemispheres 80.7
2338 Male, age 61, both hemispheres 71.0
Periaquaductal grey, anterior
nTPM: 78.4
1795 Male, age 51, unknown 79.7
2502 Female, age 75, unknown 78.0
1947 Male, age 18, unknown 77.7
Periaquaductal grey, dorsal
nTPM: 65.9
2464 Female, age 72, unknown 77.7
1831 Male, age 72, unknown 68.4
1840 Male, age 53, unknown 59.3
2850 Male, age 76, both hemispheres 58.1
Periaquaductal grey, lateral
nTPM: 70.1
2053 Male, age 18, unknown 77.4
2272 Male, age 74, both hemispheres 71.4
2140 Male, age 76, both hemispheres 61.5
Pretectal area
nTPM: 82.0
2007 Male, age 72, unknown 91.6
1815 Male, age 53, unknown 90.4
2316 Male, age 76, right hemisphere 87.3
1817 Female, age 42, unknown 86.4
2667 Female, age 75, unknown 82.1
2825 Male, age 18, unknown 82.1
1944 Female, age 72, unknown 81.9
2407 Male, age 75, both hemispheres 81.6
1816 Male, age 51, unknown 81.1
2224 Female, age 72, unknown 71.1
2273 Male, age 74, both hemispheres 66.0
Red nucleus
nTPM: 97.8
2588 Male, age 74, left hemisphere 105.1
1904 Male, age 53, unknown 103.2
2769 Male, age 72, unknown 100.0
2725 Female, age 75, unknown 99.9
1865 Male, age 51, unknown 99.2
2227 Male, age 72, unknown 99.0
2584 Male, age 75, left hemisphere 98.4
2785 Male, age 18, unknown 97.5
2823 Male, age 76, right hemisphere 97.1
2503 Female, age 72, unknown 96.4
1954 Female, age 42, unknown 90.4
1821 Female, age 72, unknown 88.1
Substantia nigra
nTPM: 71.8
2583 Male, age 75, right hemisphere 92.4
1889 Female, age 72, unknown 80.5
1851 Male, age 51, unknown 75.4
1941 Male, age 53, unknown 71.5
2590 Female, age 75, unknown 70.9
2409 Female, age 72, unknown 70.7
1916 Female, age 42, unknown 67.8
2665 Male, age 74, both hemispheres 66.3
2699 Male, age 18, unknown 62.9
2241 Male, age 72, unknown 59.6
Superior colliculus
nTPM: 86.7
1995 Male, age 72, unknown 99.5
1913 Female, age 42, unknown 98.1
2261 Male, age 18, unknown 90.4
1796 Male, age 53, unknown 88.2
1895 Male, age 76, right hemisphere 87.7
2587 Male, age 74, left hemisphere 84.5
2668 Female, age 75, unknown 84.5
2087 Female, age 72, unknown 82.5
1839 Male, age 51, unknown 80.8
2664 Male, age 75, both hemispheres 71.0
Ventral tegmental area
nTPM: 79.9
2223 Female, age 72, unknown 93.2
2410 Female, age 72, unknown 85.0
1942 Male, age 51, unknown 76.5
2021 Male, age 53, unknown 75.2
2218 Male, age 76, both hemispheres 75.0
1915 Female, age 42, unknown 74.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.6
Samples: 139

Max nTPM: 267.5
Min nTPM: 35.0
Std nTPM: 37.6
Median nTPM: 79.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 267.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 215.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 203.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 203.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 196.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 157.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 154.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 152.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 150.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 148.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 147.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 122.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 122.4
FF:10158-103A5 76 years, female 122.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.6
Pig sample Sample description nTPM
Midbrain
nTPM: 69.6
Samples: 4

Max nTPM: 125.7
Min nTPM: 47.0
Sample A Female 125.7
Sample B Female 47.0
Sample C Male 56.8
Sample D Male 49.0
Periaqueductal gray
nTPM: 39.8
Samples: 3

Max nTPM: 40.7
Min nTPM: 38.2
Sample B Female 40.7
Sample C Male 40.6
Sample D Male 38.2
Substantia nigra
nTPM: 58.0
Samples: 4

Max nTPM: 72.1
Min nTPM: 37.0
Sample A Female 72.1
Sample B Female 37.0
Sample C Male 53.7
Sample D Male 69.2
Superior colliculi
nTPM: 60.9
Samples: 4

Max nTPM: 81.5
Min nTPM: 35.7
Sample A Female 81.5
Sample B Female 35.7
Sample C Male 65.4
Sample D Male 61.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 75.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.6
Samples: 4

Max nTPM: 88.4
Min nTPM: 61.3
Sample A Male 88.4
Sample B Male 61.3
Sample C Female 76.7
Sample D Female 76.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.2
68797507 Antisense, RP_050210_02_D01, Mouse strain C57BL/6J (56 days, male) 12.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.