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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:863.3 nTPM
HPA:863.3 nTPM
GTEx:876.4 nTPM
FANTOM5:1397.6 Scaled Tags Per Million
Pig:455.1 nTPM
Mouse:534.6 nTPM
Allen mouse:21.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 863.3
Sample id Sample description nTPM
Amygdala
nTPM: 844.2
2695 Female, age 67, right hemisphere 920.8
2514 Male, age 75, right hemisphere 839.5
2814 Male, age 76, right hemisphere 823.5
1987 Female, age 91, left hemisphere 822.0
2517 Female, age 94, left hemisphere 815.4
Basal amygdala
nTPM: 863.3
2609 Male, age 75, right hemisphere 914.8
2243 Female, age 91, right hemisphere 879.3
2110 Male, age 80, left hemisphere 865.0
2685 Female, age 94, left hemisphere 852.4
2827 Female, age 67, right hemisphere 837.8
1955 Male, age 76, both hemispheres 830.7
Central amygdala
nTPM: 853.8
2515 Male, age 75, right hemisphere 914.1
2239 Male, age 80, left hemisphere 888.8
2826 Female, age 94, left hemisphere 866.0
2701 Female, age 91, right hemisphere 824.9
1905 Male, age 76, both hemispheres 775.2
Corticomedial amygdala
nTPM: 858.7
2829 Male, age 80, left hemisphere 947.1
2428 Male, age 75, right hemisphere 879.3
2242 Female, age 91, right hemisphere 873.5
2240 Male, age 76, both hemispheres 836.1
2535 Female, age 67, right hemisphere 816.2
2429 Female, age 94, left hemisphere 799.8
Lateral amygdala
nTPM: 847.7
2516 Male, age 75, right hemisphere 881.1
2256 Male, age 80, left hemisphere 875.6
2830 Female, age 67, right hemisphere 863.6
1883 Male, age 76, both hemispheres 840.8
2534 Female, age 94, left hemisphere 821.3
2255 Female, age 91, right hemisphere 804.1
Stria terminalis, bed nucleus
nTPM: 801.7
1974 Female, age 91, both hemispheres 815.4
2201 Male, age 74, unknown 798.0
2486 Female, age 94, both hemispheres 791.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 876.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 876.4
Samples: 152

Max nTPM: 1638.8
Min nTPM: 168.8
Std nTPM: 205.9
Median nTPM: 867.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1638.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1624.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1578.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1558.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1300.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1296.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1296.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1262.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1214.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1203.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1136.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1115.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1113.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1112.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1086.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1079.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1071.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1063.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1049.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1047.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1045.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1042.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1032.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1032.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1031.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1024.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1020.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1013.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1012.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1008.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1007.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1005.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1001.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 993.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 983.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 983.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 976.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 974.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 971.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 964.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 962.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 958.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 956.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 954.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 951.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 947.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 944.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 940.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 940.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 935.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 935.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 928.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 928.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 924.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 920.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 915.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 909.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 909.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 903.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 901.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 899.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 898.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 897.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 894.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 894.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 893.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 891.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 891.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 889.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 885.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 883.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 880.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 880.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 879.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 874.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 867.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 867.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 860.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 858.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 858.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 853.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 852.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 852.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 850.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 848.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 847.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 843.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 834.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 826.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 826.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 824.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 818.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 816.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 815.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 814.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 801.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 799.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 798.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 796.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 781.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 776.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 774.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 772.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 771.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 770.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 767.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 764.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 763.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 760.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 759.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 754.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 752.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 752.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 749.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 744.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 743.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 736.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 726.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 725.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 724.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 723.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 718.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 716.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 714.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 714.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 709.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 708.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 708.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 704.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 702.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 688.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 687.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 685.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 684.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 674.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 673.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 652.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 651.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 650.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 626.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 625.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 624.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 619.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 617.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 600.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 589.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 567.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 560.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 553.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 539.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 474.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 168.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1397.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1397.6
FF:10151-102I7 76 years, female 1397.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 455.1
Pig sample Sample description nTPM
Amygdala
nTPM: 455.1
Samples: 4

Max nTPM: 619.3
Min nTPM: 318.5
Sample A Female 619.3
Sample B Female 437.1
Sample C Male 445.6
Sample D Male 318.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 534.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 534.6
Samples: 4

Max nTPM: 550.3
Min nTPM: 515.1
Sample A Male 530.8
Sample B Male 550.3
Sample C Female 515.1
Sample D Female 542.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 21.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.4
68193012 Antisense, RP_040928_01_B12, Mouse strain C57BL/6J (56 days, male) 26.6
70928292 Antisense, RP_050725_02_C07, Mouse strain C57BL/6J (56 days, male) 19.4
77414654 Antisense, RP_070205_01_H12, Mouse strain C57BL/6J (56 days, male) 18.2

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