MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1010.2 nTPM
HPA:1010.2 nTPM
GTEx:979.9 nTPM
FANTOM5:986.0 Scaled Tags Per Million
Pig:973.7 nTPM
Mouse:537.0 nTPM
Allen mouse:11.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1010.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 909.5
2586 Male, age 75, left hemisphere 1015.9
2666 Male, age 74, left hemisphere 1002.5
1870 Female, age 42, unknown 966.3
2828 Female, age 72, unknown 928.4
2411 Female, age 72, unknown 905.2
1830 Male, age 51, unknown 901.2
1833 Male, age 53, unknown 898.1
1827 Male, age 72, unknown 869.4
2219 Male, age 76, both hemispheres 818.4
2019 Male, age 18, unknown 789.8
Dorsal raphe nucleus
nTPM: 925.3
2750 Male, age 76, both hemispheres 992.9
2047 Male, age 72, unknown 978.8
1828 Male, age 53, unknown 896.8
2016 Female, age 72, unknown 890.2
2298 Female, age 72, unknown 867.6
Inferior colliculus
nTPM: 822.9
2849 Male, age 72, unknown 860.1
1890 Male, age 53, unknown 831.9
1848 Female, age 42, unknown 831.8
2097 Female, age 72, unknown 767.7
Median raphe nucleus
nTPM: 1010.2
2220 Male, age 76, midline 1010.2
Pedunculopontine tegmental nucleus
nTPM: 887.5
2334 Male, age 80, both hemispheres 916.6
2338 Male, age 61, both hemispheres 903.4
1921 Female, age 85, both hemispheres 842.6
Periaquaductal grey, anterior
nTPM: 871.9
1947 Male, age 18, unknown 883.7
1795 Male, age 51, unknown 876.1
2502 Female, age 75, unknown 855.8
Periaquaductal grey, dorsal
nTPM: 867.4
2850 Male, age 76, both hemispheres 906.7
1840 Male, age 53, unknown 893.8
2464 Female, age 72, unknown 844.9
1831 Male, age 72, unknown 824.2
Periaquaductal grey, lateral
nTPM: 849.0
2053 Male, age 18, unknown 908.3
2140 Male, age 76, both hemispheres 850.2
2272 Male, age 74, both hemispheres 788.4
Pretectal area
nTPM: 822.6
2825 Male, age 18, unknown 924.3
2407 Male, age 75, both hemispheres 858.3
2667 Female, age 75, unknown 842.3
1815 Male, age 53, unknown 841.2
2224 Female, age 72, unknown 836.5
1817 Female, age 42, unknown 815.5
1816 Male, age 51, unknown 812.5
1944 Female, age 72, unknown 797.4
2316 Male, age 76, right hemisphere 778.1
2273 Male, age 74, both hemispheres 772.2
2007 Male, age 72, unknown 770.6
Red nucleus
nTPM: 925.4
2769 Male, age 72, unknown 971.6
2227 Male, age 72, unknown 957.9
1865 Male, age 51, unknown 956.6
1821 Female, age 72, unknown 956.1
1904 Male, age 53, unknown 953.8
2588 Male, age 74, left hemisphere 948.6
1954 Female, age 42, unknown 947.4
2584 Male, age 75, left hemisphere 937.3
2725 Female, age 75, unknown 911.5
2503 Female, age 72, unknown 894.7
2823 Male, age 76, right hemisphere 881.9
2785 Male, age 18, unknown 787.8
Substantia nigra
nTPM: 914.6
2699 Male, age 18, unknown 1044.2
1916 Female, age 42, unknown 982.0
2583 Male, age 75, right hemisphere 958.4
1851 Male, age 51, unknown 940.6
2665 Male, age 74, both hemispheres 919.9
2241 Male, age 72, unknown 903.4
2590 Female, age 75, unknown 863.9
1889 Female, age 72, unknown 856.8
1941 Male, age 53, unknown 846.7
2409 Female, age 72, unknown 830.5
Superior colliculus
nTPM: 847.2
2664 Male, age 75, both hemispheres 933.0
2587 Male, age 74, left hemisphere 884.7
2668 Female, age 75, unknown 883.4
1913 Female, age 42, unknown 860.0
1796 Male, age 53, unknown 848.9
1839 Male, age 51, unknown 835.4
1995 Male, age 72, unknown 831.8
2261 Male, age 18, unknown 831.2
2087 Female, age 72, unknown 792.4
1895 Male, age 76, right hemisphere 770.7
Ventral tegmental area
nTPM: 960.2
2223 Female, age 72, unknown 1176.5
2021 Male, age 53, unknown 935.7
1915 Female, age 42, unknown 921.9
2410 Female, age 72, unknown 920.9
2218 Male, age 76, both hemispheres 905.1
1942 Male, age 51, unknown 901.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 979.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 979.9
Samples: 139

Max nTPM: 1957.9
Min nTPM: 264.8
Std nTPM: 283.6
Median nTPM: 935.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1957.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1754.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1699.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1665.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1648.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 1589.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1570.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1528.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1498.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1467.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1460.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 986.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 986.0
FF:10158-103A5 76 years, female 986.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 973.7
Pig sample Sample description nTPM
Midbrain
nTPM: 973.7
Samples: 4

Max nTPM: 2250.6
Min nTPM: 433.7
Sample A Female 2250.6
Sample B Female 761.0
Sample C Male 449.6
Sample D Male 433.7
Periaqueductal gray
nTPM: 498.3
Samples: 3

Max nTPM: 561.1
Min nTPM: 462.7
Sample B Female 561.1
Sample C Male 462.7
Sample D Male 471.0
Substantia nigra
nTPM: 826.4
Samples: 4

Max nTPM: 1007.9
Min nTPM: 541.4
Sample A Female 982.9
Sample B Female 541.4
Sample C Male 773.5
Sample D Male 1007.9
Superior colliculi
nTPM: 586.0
Samples: 4

Max nTPM: 707.3
Min nTPM: 346.8
Sample A Female 707.3
Sample B Female 346.8
Sample C Male 610.4
Sample D Male 679.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 537.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 537.0
Samples: 4

Max nTPM: 555.2
Min nTPM: 518.9
Sample A Male 546.6
Sample B Male 518.9
Sample C Female 527.1
Sample D Female 555.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.9
68193012 Antisense, RP_040928_01_B12, Mouse strain C57BL/6J (56 days, male) 17.1
70928292 Antisense, RP_050725_02_C07, Mouse strain C57BL/6J (56 days, male) 11.0
77414654 Antisense, RP_070205_01_H12, Mouse strain C57BL/6J (56 days, male) 7.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.