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PEA15
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  • PEA15
BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:981.5 nTPM
HPA:981.5 nTPM
FANTOM5:1308.1 Scaled Tags Per Million
Pig:804.1 nTPM
Allen mouse:10.5 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 981.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 904.4
2301 Female, age 85, both hemispheres 1083.8
2188 Female, age 91, both hemispheres 908.9
2090 Male, age 80, both hemispheres 856.0
1984 Male, age 76, both hemispheres 769.0
Dorsal cochlear nucleus
nTPM: 908.4
2187 Female, age 91, both hemispheres 1008.5
2802 Male, age 74, right hemisphere 968.2
2378 Male, age 80, both hemispheres 871.7
2370 Male, age 61, both hemispheres 867.6
2058 Male, age 76, both hemispheres 825.9
Dorsal tegmental nucleus
nTPM: 925.3
2358 Male, age 61, both hemispheres 980.3
2326 Male, age 74, both hemispheres 933.3
2083 Male, age 80, both hemispheres 913.3
1936 Male, age 76, left hemisphere 874.3
Dorsolateral tegmental area
nTPM: 901.7
2751 Female, age 85, both hemispheres 993.0
2654 Male, age 80, both hemispheres 938.7
2337 Male, age 61, both hemispheres 910.4
2141 Male, age 76, both hemispheres 838.9
2360 Male, age 74, both hemispheres 827.5
Kolliker-Fuse nucleus
nTPM: 885.7
2793 Female, age 91, left hemisphere 917.2
2315 Male, age 76, right hemisphere 880.6
2163 Male, age 80, both hemispheres 859.1
Lateral lemniscal nuclei
nTPM: 782.6
2320 Female, age 91, left hemisphere 809.7
2453 Male, age 74, right hemisphere 790.7
2746 Female, age 85, left hemisphere 788.2
2169 Male, age 76, both hemispheres 762.4
2036 Male, age 80, both hemispheres 761.8
Lateral parabrachial nucleus
nTPM: 849.5
2792 Male, age 76, both hemispheres 960.4
2013 Male, age 80, both hemispheres 848.5
2790 Male, age 61, both hemispheres 827.1
2139 Female, age 85, right hemisphere 762.0
Lateral vestibular nucleus
nTPM: 923.4
2311 Male, age 80, both hemispheres 997.5
2184 Male, age 76, both hemispheres 849.3
Locus coeruleus
nTPM: 882.8
2720 Male, age 74, both hemispheres 948.9
2788 Male, age 74, unknown 881.9
2014 Male, age 55, unknown 880.4
1980 Male, age 76, both hemispheres 879.7
2317 Female, age 72, unknown 873.1
2162 Male, age 80, both hemispheres 864.5
2123 Female, age 91, both hemispheres 850.9
Medial olivary nucleus
nTPM: 981.5
1962 Male, age 76, both hemispheres 1091.7
1943 Male, age 61, both hemispheres 958.7
2138 Female, age 91, both hemispheres 944.7
2851 Male, age 80, both hemispheres 931.0
Medial parabrachial nucleus
nTPM: 936.5
2170 Female, age 91, both hemispheres 1149.5
2854 Male, age 80, both hemispheres 928.1
2463 Female, age 85, right hemisphere 914.0
2786 Male, age 76, both hemispheres 878.7
2156 Male, age 61, both hemispheres 812.4
Medial periolivary nuclei
nTPM: 799.3
2791 Male, age 74, right hemisphere 841.0
2458 Female, age 91, both hemispheres 840.6
2081 Male, age 80, both hemispheres 816.2
2063 Male, age 76, both hemispheres 770.1
2171 Female, age 85, both hemispheres 728.8
Motor facial nucleus
nTPM: 810.4
2126 Male, age 61, both hemispheres 853.5
2697 Female, age 85, both hemispheres 847.1
2795 Female, age 91, both hemispheres 839.3
2365 Male, age 74, right hemisphere 838.6
2062 Male, age 76, both hemispheres 747.1
2327 Male, age 80, both hemispheres 736.6
Motor trigeminal nucleus
nTPM: 846.0
2321 Female, age 91, both hemispheres 916.9
2309 Male, age 76, both hemispheres 868.2
2560 Male, age 74, both hemispheres 856.7
2335 Male, age 61, both hemispheres 836.7
2079 Male, age 80, both hemispheres 751.8
Nuclei of the trapezoid body
nTPM: 769.1
2166 Male, age 80, both hemispheres 815.4
2368 Female, age 91, both hemispheres 809.1
1983 Male, age 76, both hemispheres 756.0
2159 Male, age 61, both hemispheres 752.9
2735 Female, age 85, both hemispheres 712.1
Paramedian reticular nucleus
nTPM: 873.9
2052 Male, age 76, both hemispheres 940.0
2057 Male, age 80, both hemispheres 865.2
2313 Male, age 61, both hemispheres 848.4
2050 Female, age 85, both hemispheres 842.1
Pontine nuclei
nTPM: 783.9
2319 Female, age 91, both hemispheres 879.3
2454 Male, age 74, left hemisphere 849.8
2109 Female, age 72, unknown 821.4
2115 Male, age 80, left hemisphere 783.6
1863 Male, age 55, unknown 753.4
1968 Male, age 76, left hemisphere 750.3
2727 Male, age 61, right hemisphere 718.4
2787 Female, age 85, both hemispheres 714.9
Pontine raphe nucleus
nTPM: 841.4
2853 Male, age 76, midline 914.5
2122 Female, age 85, midline 768.3
Posteroventral cochlear nucleus
nTPM: 882.4
2341 Male, age 80, both hemispheres 988.0
2135 Female, age 91, both hemispheres 923.8
2371 Male, age 61, both hemispheres 871.9
2070 Male, age 76, both hemispheres 828.6
2752 Female, age 85, both hemispheres 799.4
Principal sensory trigeminal nucleus
nTPM: 818.0
2367 Female, age 91, left hemisphere 898.3
2324 Male, age 76, both hemispheres 866.9
2158 Male, age 61, both hemispheres 755.2
2008 Male, age 80, left hemisphere 751.8
Reticular pontine nucleus, caudal
nTPM: 827.6
2559 Male, age 74, both hemispheres 926.5
2457 Female, age 91, both hemispheres 832.2
2092 Male, age 76, both hemispheres 811.4
2332 Male, age 80, right hemisphere 740.4
Reticular pontine nucleus, oral
nTPM: 875.4
2361 Male, age 74, both hemispheres 907.5
1939 Male, age 80, both hemispheres 904.8
2167 Male, age 76, both hemispheres 892.4
2366 Female, age 91, both hemispheres 838.4
2012 Female, age 85, both hemispheres 833.9
Reticulotegmental nucleus
nTPM: 874.0
2322 Female, age 91, both hemispheres 950.2
2452 Male, age 74, both hemispheres 880.0
2333 Male, age 80, both hemispheres 838.5
2325 Male, age 76, both hemispheres 827.3
Spinal trigeminal nucleus, oral
nTPM: 807.9
2164 Male, age 80, both hemispheres 850.3
2737 Female, age 85, both hemispheres 788.8
1978 Male, age 76, both hemispheres 784.6
Subcoeruleus area
nTPM: 869.0
2369 Female, age 85, left hemisphere 1015.9
2451 Male, age 74, both hemispheres 865.9
1958 Male, age 80, both hemispheres 864.1
2323 Female, age 91, left hemisphere 826.8
2089 Male, age 76, left hemisphere 772.4
Superior olive
nTPM: 807.6
2364 Male, age 74, right hemisphere 843.5
2561 Female, age 91, both hemispheres 820.6
2020 Male, age 76, both hemispheres 812.8
2329 Male, age 80, right hemisphere 809.5
1875 Female, age 85, both hemispheres 751.6
Superior vestibular nucleus
nTPM: 910.0
2383 Male, age 74, both hemispheres 941.9
2015 Male, age 80, both hemispheres 910.8
2061 Male, age 76, both hemispheres 877.4
Ventral periolivary nuclei
nTPM: 780.2
2023 Male, age 76, both hemispheres 825.6
2794 Female, age 91, left hemisphere 774.6
2165 Male, age 80, both hemispheres 772.0
2130 Female, age 85, both hemispheres 748.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 831.7
2359 Male, age 61, both hemispheres 902.6
2840 Female, age 85, both hemispheres 878.9
2456 Female, age 91, both hemispheres 838.0
1959 Male, age 76, both hemispheres 796.0
2161 Male, age 80, both hemispheres 788.2
2449 Male, age 74, both hemispheres 786.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 1308.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1308.1
FF:10182-103D2 60 years, female 1486.8
FF:10165-103B3 76 years, female 1129.4
Pons
Scaled Tags Per Million: 704.9
FF:10033-101E6 18-54 years, mixed 704.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 804.1
Pig sample Sample description nTPM
Pons
nTPM: 804.2
Samples: 4

Max nTPM: 1164.6
Min nTPM: 542.0
Sample A Female 542.0
Sample B Female 593.6
Sample C Male 916.4
Sample D Male 1164.6

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 10.5
70928292 Antisense, RP_050725_02_C07, Mouse strain C57BL/6J (56 days, male) 12.1
68193012 Antisense, RP_040928_01_B12, Mouse strain C57BL/6J (56 days, male) 11.9
77414654 Antisense, RP_070205_01_H12, Mouse strain C57BL/6J (56 days, male) 7.5

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The Human Protein Atlas project is funded
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