BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:17.7 nTPM
HPA:17.7 nTPM
GTEx:24.0 nTPM
FANTOM5:38.3 Scaled Tags Per Million
Pig:1.2 nTPM
Mouse:0.8 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001562
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 17.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.7
1781 Male, age 74, unknown 35.3
2481 Female, age 94, left hemisphere 17.2
2289 Male, age 61, right hemisphere 16.2
2846 Female, age 79, unknown 15.1
1857 Female, age 85, left hemisphere 14.9
2288 Male, age 75, left hemisphere 14.5
1854 Male, age 80, left hemisphere 14.2
2290 Female, age 72, unknown 14.2
Claustrum
nTPM: 15.1
2292 Female, age 85, both hemispheres 20.7
1956 Male, age 74, unknown 15.9
2198 Male, age 80, both hemispheres 15.6
2196 Female, age 79, unknown 15.5
2284 Female, age 91, both hemispheres 14.2
2491 Male, age 75, both hemispheres 14.2
2645 Female, age 72, unknown 13.9
2392 Female, age 94, both hemispheres 13.3
2568 Male, age 61, both hemispheres 12.1
Globus pallidus, externus
nTPM: 16.4
2567 Female, age 72, unknown 17.8
2772 Female, age 79, unknown 17.7
1996 Male, age 80, right hemisphere 17.5
2395 Male, age 75, both hemispheres 14.9
2646 Male, age 61, right hemisphere 14.1
Globus pallidus, internus
nTPM: 17.4
2111 Female, age 85, right hemisphere 19.4
2566 Female, age 72, unknown 18.4
2778 Female, age 91, both hemispheres 18.3
2287 Male, age 75, right hemisphere 17.5
2037 Male, age 80, right hemisphere 16.9
1818 Male, age 74, unknown 16.0
2483 Female, age 94, right hemisphere 15.5
Nucleus accumbens
nTPM: 14.9
2698 Female, age 72, unknown 16.6
2391 Female, age 94, left hemisphere 16.5
1783 Male, age 74, unknown 16.1
2732 Male, age 80, right hemisphere 15.2
1806 Female, age 85, left hemisphere 15.0
2286 Male, age 75, left hemisphere 14.7
1856 Female, age 91, right hemisphere 13.4
2824 Male, age 61, right hemisphere 11.9
Nucleus basalis of Meynert
nTPM: 14.5
2484 Female, age 94, left hemisphere 15.4
2821 Male, age 75, both hemispheres 14.8
2393 Male, age 80, right hemisphere 14.0
2569 Male, age 61, both hemispheres 13.7
Nucleus of the diagonal band
nTPM: 13.4
1812 Female, age 91, both hemispheres 17.7
1979 Male, age 74, unknown 13.9
2775 Male, age 80, right hemisphere 12.4
2195 Female, age 85, both hemispheres 11.8
2029 Male, age 61, right hemisphere 10.8
Olfactory tubercle
nTPM: 12.5
1846 Male, age 80, right hemisphere 13.0
1998 Female, age 91, both hemispheres 12.8
2856 Male, age 75, right hemisphere 12.4
2487 Female, age 94, left hemisphere 11.8
Putamen
nTPM: 14.4
2482 Female, age 94, left hemisphere 15.7
2489 Female, age 72, unknown 14.9
1829 Male, age 74, unknown 14.5
1937 Female, age 91, right hemisphere 14.5
2647 Male, age 75, left hemisphere 14.1
2466 Female, age 79, unknown 13.9
1838 Male, age 80, right hemisphere 13.6
Septal nuclei
nTPM: 14.1
2009 Female, age 91, both hemispheres 17.5
2199 Male, age 80, right hemisphere 16.0
2629 Female, age 94, right hemisphere 14.2
2394 Male, age 61, left hemisphere 14.0
2031 Female, age 72, unknown 12.8
2059 Female, age 85, both hemispheres 12.5
1960 Male, age 74, unknown 11.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.0
Samples: 246

Max nTPM: 274.8
Min nTPM: 3.2
Std nTPM: 35.6
Median nTPM: 11.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 274.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 263.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 190.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 164.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 145.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 134.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 133.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 130.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 118.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 116.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 110.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.5
Samples: 246

Max nTPM: 206.2
Min nTPM: 2.3
Std nTPM: 28.2
Median nTPM: 8.0
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 206.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 174.3
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 171.8
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 145.1
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 139.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 129.1
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 100.7
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 92.6
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 91.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 87.8
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 85.0
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Brain - Putamen (basal ganglia)
Average nTPM: 21.7
Samples: 205

Max nTPM: 251.7
Min nTPM: 3.6
Std nTPM: 31.3
Median nTPM: 12.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 251.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 191.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 154.9
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 127.8
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 123.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 117.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 113.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 113.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 108.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 105.1
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 98.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.1
FF:10164-103B2 76 years, female 19.1
Globus pallidus
Scaled Tags Per Million: 38.3
FF:10175-103C4 60 years, female 44.9
FF:10161-103A8 76 years, female 31.8
Nucleus accumbens
Scaled Tags Per Million: 20.7
FF:10037-101F1 23-56 years, mixed 20.7
Putamen
Scaled Tags Per Million: 14.7
FF:10176-103C5 60 years, female 14.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.2
Pig sample Sample description nTPM
Caudate
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.4
Putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.1
Sample A Female 0.8
Sample B Female 0.1
Sample C Male 0.3
Sample D Male 0.3
Septum
nTPM: 1.2
Samples: 4

Max nTPM: 2.8
Min nTPM: 0.4
Sample A Female 2.8
Sample B Female 0.4
Sample C Male 1.0
Sample D Male 0.6
Ventral pallidum
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.6
Sample C Male 0.8
Sample D Male 0.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.6
Sample A Male 0.9
Sample B Male 1.0
Sample C Female 0.8
Sample D Female 0.6
Septum
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 0.7
Sample C Female 0.7
Sample D Female 0.7
Ventral forebrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Male 0.6
Sample B Male 0.9
Sample C Female 0.5
Sample D Female 0.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
70814344 Antisense, RP_050725_02_F11, Mouse strain C57BL/6J (56 days, male) 0.1
68341836 Antisense, RP_041207_02_C08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
68341836 Antisense, RP_041207_02_C08, Mouse strain C57BL/6J (56 days, male) 0.2
70814344 Antisense, RP_050725_02_F11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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