MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.1 nTPM
HPA:42.1 nTPM
GTEx:35.8 nTPM
FANTOM5:70.2 Scaled Tags Per Million
Pig:14.1 nTPM
Mouse:18.3 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.1
2586 Male, age 75, left hemisphere 50.9
2019 Male, age 18, unknown 48.3
2828 Female, age 72, unknown 41.9
2666 Male, age 74, left hemisphere 39.0
1833 Male, age 53, unknown 37.3
1830 Male, age 51, unknown 37.1
1870 Female, age 42, unknown 36.9
2411 Female, age 72, unknown 36.6
1827 Male, age 72, unknown 34.2
2219 Male, age 76, both hemispheres 28.8
Dorsal raphe nucleus
nTPM: 36.0
1828 Male, age 53, unknown 39.4
2016 Female, age 72, unknown 36.3
2750 Male, age 76, both hemispheres 36.1
2047 Male, age 72, unknown 35.6
2298 Female, age 72, unknown 32.8
Inferior colliculus
nTPM: 35.2
1890 Male, age 53, unknown 39.2
2097 Female, age 72, unknown 34.3
1848 Female, age 42, unknown 33.7
2849 Male, age 72, unknown 33.7
Median raphe nucleus
nTPM: 35.0
2220 Male, age 76, midline 35.0
Pedunculopontine tegmental nucleus
nTPM: 35.0
2338 Male, age 61, both hemispheres 38.5
2334 Male, age 80, both hemispheres 35.6
1921 Female, age 85, both hemispheres 31.0
Periaquaductal grey, anterior
nTPM: 35.2
2502 Female, age 75, unknown 38.4
1795 Male, age 51, unknown 35.9
1947 Male, age 18, unknown 31.4
Periaquaductal grey, dorsal
nTPM: 35.6
2850 Male, age 76, both hemispheres 40.2
2464 Female, age 72, unknown 35.7
1831 Male, age 72, unknown 33.9
1840 Male, age 53, unknown 32.5
Periaquaductal grey, lateral
nTPM: 36.3
2140 Male, age 76, both hemispheres 41.9
2272 Male, age 74, both hemispheres 34.6
2053 Male, age 18, unknown 32.4
Pretectal area
nTPM: 37.0
1817 Female, age 42, unknown 42.3
2007 Male, age 72, unknown 42.1
1944 Female, age 72, unknown 39.2
1815 Male, age 53, unknown 39.1
1816 Male, age 51, unknown 38.8
2316 Male, age 76, right hemisphere 37.1
2407 Male, age 75, both hemispheres 36.1
2667 Female, age 75, unknown 34.0
2273 Male, age 74, both hemispheres 33.8
2825 Male, age 18, unknown 33.5
2224 Female, age 72, unknown 30.4
Red nucleus
nTPM: 42.1
2785 Male, age 18, unknown 48.6
2769 Male, age 72, unknown 43.0
2588 Male, age 74, left hemisphere 42.9
1954 Female, age 42, unknown 42.8
1904 Male, age 53, unknown 42.7
2227 Male, age 72, unknown 42.6
2584 Male, age 75, left hemisphere 42.4
2503 Female, age 72, unknown 42.0
1865 Male, age 51, unknown 41.9
1821 Female, age 72, unknown 40.5
2823 Male, age 76, right hemisphere 38.9
2725 Female, age 75, unknown 36.5
Substantia nigra
nTPM: 36.4
2583 Male, age 75, right hemisphere 39.6
2590 Female, age 75, unknown 38.7
1889 Female, age 72, unknown 37.9
2665 Male, age 74, both hemispheres 37.9
1851 Male, age 51, unknown 37.7
1916 Female, age 42, unknown 36.0
2699 Male, age 18, unknown 36.0
2241 Male, age 72, unknown 34.3
1941 Male, age 53, unknown 33.5
2409 Female, age 72, unknown 32.6
Superior colliculus
nTPM: 36.9
2664 Male, age 75, both hemispheres 41.7
1995 Male, age 72, unknown 40.6
1913 Female, age 42, unknown 39.0
2668 Female, age 75, unknown 38.8
2087 Female, age 72, unknown 36.7
2261 Male, age 18, unknown 36.2
2587 Male, age 74, left hemisphere 35.5
1839 Male, age 51, unknown 34.2
1796 Male, age 53, unknown 33.9
1895 Male, age 76, right hemisphere 32.3
Ventral tegmental area
nTPM: 35.5
2223 Female, age 72, unknown 36.8
2410 Female, age 72, unknown 36.7
2021 Male, age 53, unknown 35.5
1915 Female, age 42, unknown 35.2
1942 Male, age 51, unknown 35.0
2218 Male, age 76, both hemispheres 33.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.8
Samples: 139

Max nTPM: 91.2
Min nTPM: 14.4
Std nTPM: 13.3
Median nTPM: 32.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 91.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 80.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 72.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 70.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 70.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 66.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 64.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 62.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 62.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 61.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 61.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.2
FF:10158-103A5 76 years, female 70.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.1
Pig sample Sample description nTPM
Midbrain
nTPM: 11.1
Samples: 4

Max nTPM: 15.5
Min nTPM: 8.6
Sample A Female 15.5
Sample B Female 8.9
Sample C Male 11.5
Sample D Male 8.6
Periaqueductal gray
nTPM: 9.6
Samples: 3

Max nTPM: 9.9
Min nTPM: 9.4
Sample B Female 9.4
Sample C Male 9.9
Sample D Male 9.6
Substantia nigra
nTPM: 11.6
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.8
Sample A Female 10.8
Sample B Female 12.0
Sample C Male 10.8
Sample D Male 12.6
Superior colliculi
nTPM: 14.1
Samples: 4

Max nTPM: 22.2
Min nTPM: 10.9
Sample A Female 12.3
Sample B Female 22.2
Sample C Male 11.1
Sample D Male 10.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 18.9
Min nTPM: 17.4
Sample A Male 18.9
Sample B Male 18.5
Sample C Female 18.3
Sample D Female 17.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68844038 Antisense, RP_050217_02_G07, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.