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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: High
Goblet cells: High
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:809.8 nTPM
HPA:809.8 nTPM
GTEx:292.3 nTPM
FANTOM5:4283.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA006154Antibody HPA012012Antibody CAB009454
Endocrine cells -High-
Enterocytes -High-
Enterocytes - Microvilli -High-
Glandular cells High-High
Goblet cells -High-
Paneth cells -Not detected-






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 809.8
overview
Male, age 65
Small intestine sample 232
nTPM: 1553.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 343.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 537.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 804.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 292.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 292.3
Samples: 187

Max nTPM: 1550.7
Min nTPM: 0.0
Std nTPM: 323.1
Median nTPM: 166.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1550.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1426.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1182.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1181.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1173.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1161.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1136.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1047.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1042.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 951.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 938.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 935.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 923.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 916.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 897.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 838.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 826.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 825.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 824.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 733.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 717.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 705.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 700.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 682.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 677.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 657.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 614.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 600.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 597.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 597.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 556.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 552.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 548.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 546.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 535.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 508.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 507.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 506.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 499.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 498.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 498.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 487.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 487.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 476.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 476.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 470.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 466.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 457.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 456.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 425.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 417.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 416.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 408.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 407.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 400.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 386.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 382.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 378.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 361.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 354.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 346.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 341.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 333.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 325.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 324.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 312.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 310.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 309.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 306.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 288.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 286.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 272.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 269.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 266.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 259.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 253.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 250.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 244.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 236.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 236.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 221.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 217.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 213.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 210.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 210.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 201.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 193.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 184.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 179.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 178.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 176.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 170.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 167.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 166.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 163.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 159.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 156.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 155.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 154.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 150.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 149.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 146.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 145.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 144.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 144.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 143.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 139.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 137.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 135.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 133.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 130.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 126.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 124.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 118.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 112.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 110.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 107.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 105.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 103.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 100.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 100.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 83.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 82.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 75.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 72.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 71.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 70.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 70.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 68.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 63.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 61.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 57.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 57.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 56.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 56.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 51.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 51.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 50.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 47.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 47.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 46.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 44.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 42.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 29.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 28.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 27.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 25.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 21.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 18.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 18.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 15.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 14.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 13.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 12.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 10.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 7.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 7.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 7.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 6.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 6.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 5.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 5.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 4.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 4.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 4.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 4.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 3.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 3.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 3.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 3.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 3.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 2.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.7
GTEX-1192X-2526-SM-59868 50-59 years, male 1.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 0.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 0.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 4283.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 4283.7
FF:10024-101D6 15,40,85 years, mixed 4283.7

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