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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:175.9 nTPM
FANTOM5:131.2 Scaled Tags Per Million
Pig:28.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA006949
Glial cells Medium
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 175.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 175.9
Samples: 246

Max nTPM: 547.6
Min nTPM: 25.7
Std nTPM: 78.8
Median nTPM: 164.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 547.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 419.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 413.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 386.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 372.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 354.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 350.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 333.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 321.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 320.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 316.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 314.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 311.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 309.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 308.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 304.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 304.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 295.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 292.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 291.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 283.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 283.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 281.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 279.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 278.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 271.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 268.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 265.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 265.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 263.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 263.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 262.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 262.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 260.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 260.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 259.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 256.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 253.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 250.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 249.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 248.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 248.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 248.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 247.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 246.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 246.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 246.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 244.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 242.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 242.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 241.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 241.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 240.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 239.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 237.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 237.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 236.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 234.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 229.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 224.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 223.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 223.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 221.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 218.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 217.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 216.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 215.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 213.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 212.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 212.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 211.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 211.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 210.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 209.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 209.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 208.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 208.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 208.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 206.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 206.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 205.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 204.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 204.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 203.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 201.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 198.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 197.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 197.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 196.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 196.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 194.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 193.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 193.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 191.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 191.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 191.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 190.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 190.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 189.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 188.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 187.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 186.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 184.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 181.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 181.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 179.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 177.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 176.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 176.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 173.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 170.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 169.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 168.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 168.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 168.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 168.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 168.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 168.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 167.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 167.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 166.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 166.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 165.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 163.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 163.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 162.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 161.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 160.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 160.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 159.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 159.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 156.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 156.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 155.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 153.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 153.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 153.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 152.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 152.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 151.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 150.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 149.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 149.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 149.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 149.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 149.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 148.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 146.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 144.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 143.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 142.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 142.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 142.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 141.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 140.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 140.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 139.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 137.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 137.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 137.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 137.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 136.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 135.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 135.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 134.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 134.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 133.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 133.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 132.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 132.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 130.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 129.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 129.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 128.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 128.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 126.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 126.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 125.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 125.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 124.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 123.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 121.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 120.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 119.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 118.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 117.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 117.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 116.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 116.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 113.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 113.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 113.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 110.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 109.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 109.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 109.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 108.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 108.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 108.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 108.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 107.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 107.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 106.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 106.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 106.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 105.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 105.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 104.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 103.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 103.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 102.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 102.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 98.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 97.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 96.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 95.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 92.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 90.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 90.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 87.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 86.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 85.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 83.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 83.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 79.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 79.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 79.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 77.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 76.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 76.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 75.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 67.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 63.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 63.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 60.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 58.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 54.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 54.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 52.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 50.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 39.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 37.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 34.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 33.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 26.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 25.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 131.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 131.2
FF:10164-103B2 76 years, female 131.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 28.8
Pig sample Sample description nTPM
Caudate
nTPM: 28.8
Samples: 4

Max nTPM: 36.6
Min nTPM: 23.1
Sample A Female 23.1
Sample B Female 36.6
Sample C Male 31.1
Sample D Male 24.3

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