MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:126.1 nTPM
HPA:126.1 nTPM
GTEx:65.2 nTPM
FANTOM5:156.9 Scaled Tags Per Million
Pig:94.8 nTPM
Mouse:169.7 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 126.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 119.8
2411 Female, age 72, unknown 129.4
1870 Female, age 42, unknown 124.9
1827 Male, age 72, unknown 123.1
2019 Male, age 18, unknown 123.1
1833 Male, age 53, unknown 120.9
2828 Female, age 72, unknown 119.8
1830 Male, age 51, unknown 118.2
2219 Male, age 76, both hemispheres 118.2
2586 Male, age 75, left hemisphere 112.2
2666 Male, age 74, left hemisphere 108.3
Dorsal raphe nucleus
nTPM: 124.9
2298 Female, age 72, unknown 133.9
2750 Male, age 76, both hemispheres 126.1
2047 Male, age 72, unknown 123.0
1828 Male, age 53, unknown 121.5
2016 Female, age 72, unknown 119.8
Inferior colliculus
nTPM: 120.1
2097 Female, age 72, unknown 125.9
1890 Male, age 53, unknown 119.2
1848 Female, age 42, unknown 118.5
2849 Male, age 72, unknown 116.9
Median raphe nucleus
nTPM: 126.1
2220 Male, age 76, midline 126.1
Pedunculopontine tegmental nucleus
nTPM: 123.8
2334 Male, age 80, both hemispheres 126.9
1921 Female, age 85, both hemispheres 122.5
2338 Male, age 61, both hemispheres 122.1
Periaquaductal grey, anterior
nTPM: 121.7
1947 Male, age 18, unknown 123.1
2502 Female, age 75, unknown 122.4
1795 Male, age 51, unknown 119.5
Periaquaductal grey, dorsal
nTPM: 118.6
2850 Male, age 76, both hemispheres 120.5
1840 Male, age 53, unknown 120.0
2464 Female, age 72, unknown 117.3
1831 Male, age 72, unknown 116.6
Periaquaductal grey, lateral
nTPM: 122.0
2272 Male, age 74, both hemispheres 128.2
2053 Male, age 18, unknown 119.9
2140 Male, age 76, both hemispheres 117.9
Pretectal area
nTPM: 123.6
2273 Male, age 74, both hemispheres 132.0
2224 Female, age 72, unknown 126.7
1817 Female, age 42, unknown 126.0
2007 Male, age 72, unknown 125.9
1816 Male, age 51, unknown 124.4
1944 Female, age 72, unknown 124.4
2667 Female, age 75, unknown 124.1
1815 Male, age 53, unknown 123.9
2825 Male, age 18, unknown 119.1
2316 Male, age 76, right hemisphere 117.5
2407 Male, age 75, both hemispheres 115.5
Red nucleus
nTPM: 120.6
1821 Female, age 72, unknown 128.2
2503 Female, age 72, unknown 123.9
1865 Male, age 51, unknown 123.5
1904 Male, age 53, unknown 121.8
2785 Male, age 18, unknown 121.8
1954 Female, age 42, unknown 121.7
2769 Male, age 72, unknown 120.1
2227 Male, age 72, unknown 120.0
2725 Female, age 75, unknown 119.3
2823 Male, age 76, right hemisphere 118.3
2588 Male, age 74, left hemisphere 115.2
2584 Male, age 75, left hemisphere 112.7
Substantia nigra
nTPM: 123.4
1916 Female, age 42, unknown 132.0
1851 Male, age 51, unknown 128.1
2241 Male, age 72, unknown 126.7
1889 Female, age 72, unknown 125.6
1941 Male, age 53, unknown 123.7
2590 Female, age 75, unknown 122.9
2409 Female, age 72, unknown 121.9
2699 Male, age 18, unknown 120.9
2583 Male, age 75, right hemisphere 117.7
2665 Male, age 74, both hemispheres 114.5
Superior colliculus
nTPM: 119.8
2587 Male, age 74, left hemisphere 128.6
1796 Male, age 53, unknown 122.6
2261 Male, age 18, unknown 121.0
2087 Female, age 72, unknown 120.2
1895 Male, age 76, right hemisphere 119.7
1913 Female, age 42, unknown 119.6
2668 Female, age 75, unknown 119.4
1839 Male, age 51, unknown 118.7
1995 Male, age 72, unknown 117.8
2664 Male, age 75, both hemispheres 110.7
Ventral tegmental area
nTPM: 124.3
2410 Female, age 72, unknown 132.1
1915 Female, age 42, unknown 126.3
2218 Male, age 76, both hemispheres 125.2
2223 Female, age 72, unknown 124.0
1942 Male, age 51, unknown 119.7
2021 Male, age 53, unknown 118.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.2
Samples: 139

Max nTPM: 177.4
Min nTPM: 26.2
Std nTPM: 20.9
Median nTPM: 60.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 177.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 160.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 145.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 137.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 128.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 99.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 97.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 94.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 91.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 91.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 88.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 156.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 156.9
FF:10158-103A5 76 years, female 156.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 94.8
Pig sample Sample description nTPM
Midbrain
nTPM: 92.5
Samples: 4

Max nTPM: 113.5
Min nTPM: 83.1
Sample A Female 113.5
Sample B Female 88.9
Sample C Male 83.1
Sample D Male 84.6
Periaqueductal gray
nTPM: 78.2
Samples: 3

Max nTPM: 85.3
Min nTPM: 70.2
Sample B Female 79.0
Sample C Male 85.3
Sample D Male 70.2
Substantia nigra
nTPM: 86.1
Samples: 4

Max nTPM: 113.0
Min nTPM: 70.7
Sample A Female 113.0
Sample B Female 71.0
Sample C Male 89.5
Sample D Male 70.7
Superior colliculi
nTPM: 94.8
Samples: 4

Max nTPM: 112.5
Min nTPM: 77.5
Sample A Female 112.5
Sample B Female 77.5
Sample C Male 98.8
Sample D Male 90.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 169.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.7
Samples: 4

Max nTPM: 172.4
Min nTPM: 167.2
Sample A Male 167.2
Sample B Male 172.4
Sample C Female 167.8
Sample D Female 171.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
69540543 Antisense, RP_050426_01_H12, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.