BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84.1 nTPM
HPA:84.1 nTPM
GTEx:35.1 nTPM
FANTOM5:273.1 Scaled Tags Per Million
Pig:114.9 nTPM
Mouse:84.7 nTPM
Allen mouse:2.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 84.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.8
2288 Male, age 75, left hemisphere 84.7
1781 Male, age 74, unknown 35.5
2846 Female, age 79, unknown 31.7
2481 Female, age 94, left hemisphere 25.8
1854 Male, age 80, left hemisphere 20.9
2290 Female, age 72, unknown 18.3
1857 Female, age 85, left hemisphere 15.7
2289 Male, age 61, right hemisphere 13.9
Claustrum
nTPM: 55.3
2392 Female, age 94, both hemispheres 83.1
1956 Male, age 74, unknown 72.1
2292 Female, age 85, both hemispheres 62.8
2491 Male, age 75, both hemispheres 58.0
2198 Male, age 80, both hemispheres 55.1
2196 Female, age 79, unknown 50.0
2568 Male, age 61, both hemispheres 48.7
2284 Female, age 91, both hemispheres 45.0
2645 Female, age 72, unknown 23.1
Globus pallidus, externus
nTPM: 63.5
2395 Male, age 75, both hemispheres 89.3
2772 Female, age 79, unknown 83.3
1996 Male, age 80, right hemisphere 77.0
2567 Female, age 72, unknown 42.1
2646 Male, age 61, right hemisphere 25.6
Globus pallidus, internus
nTPM: 84.1
2287 Male, age 75, right hemisphere 134.6
2778 Female, age 91, both hemispheres 125.9
2111 Female, age 85, right hemisphere 110.5
1818 Male, age 74, unknown 65.2
2037 Male, age 80, right hemisphere 57.3
2566 Female, age 72, unknown 56.7
2483 Female, age 94, right hemisphere 38.3
Nucleus accumbens
nTPM: 42.8
2391 Female, age 94, left hemisphere 85.2
2286 Male, age 75, left hemisphere 82.3
2698 Female, age 72, unknown 38.7
2732 Male, age 80, right hemisphere 33.1
2824 Male, age 61, right hemisphere 31.4
1783 Male, age 74, unknown 28.4
1806 Female, age 85, left hemisphere 25.8
1856 Female, age 91, right hemisphere 17.2
Nucleus basalis of Meynert
nTPM: 27.8
2821 Male, age 75, both hemispheres 47.9
2393 Male, age 80, right hemisphere 29.2
2484 Female, age 94, left hemisphere 21.9
2569 Male, age 61, both hemispheres 12.3
Nucleus of the diagonal band
nTPM: 38.8
2029 Male, age 61, right hemisphere 54.8
2775 Male, age 80, right hemisphere 42.7
1812 Female, age 91, both hemispheres 37.6
2195 Female, age 85, both hemispheres 32.2
1979 Male, age 74, unknown 26.9
Olfactory tubercle
nTPM: 38.9
1998 Female, age 91, both hemispheres 44.5
2487 Female, age 94, left hemisphere 41.2
1846 Male, age 80, right hemisphere 39.6
2856 Male, age 75, right hemisphere 30.4
Putamen
nTPM: 31.6
2482 Female, age 94, left hemisphere 41.6
1937 Female, age 91, right hemisphere 39.6
1829 Male, age 74, unknown 39.3
2466 Female, age 79, unknown 36.5
2647 Male, age 75, left hemisphere 26.3
1838 Male, age 80, right hemisphere 19.8
2489 Female, age 72, unknown 18.1
Septal nuclei
nTPM: 36.5
2629 Female, age 94, right hemisphere 48.6
2031 Female, age 72, unknown 42.4
2394 Male, age 61, left hemisphere 40.5
1960 Male, age 74, unknown 40.1
2009 Female, age 91, both hemispheres 33.1
2059 Female, age 85, both hemispheres 26.2
2199 Male, age 80, right hemisphere 24.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.1
Samples: 246

Max nTPM: 76.5
Min nTPM: 15.9
Std nTPM: 9.3
Median nTPM: 33.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 76.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 76.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 67.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 59.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 57.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 57.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 57.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 54.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 54.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 52.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 51.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.7
Samples: 246

Max nTPM: 87.1
Min nTPM: 7.7
Std nTPM: 10.8
Median nTPM: 30.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 87.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 71.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 61.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 59.9
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 58.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 54.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 54.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 53.2
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 51.6
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 50.3
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 49.7
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Brain - Putamen (basal ganglia)
Average nTPM: 34.7
Samples: 205

Max nTPM: 75.2
Min nTPM: 13.6
Std nTPM: 9.5
Median nTPM: 34.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 75.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 59.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 56.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 55.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 55.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 54.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 54.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 54.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 53.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 53.1
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 52.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 273.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 154.1
FF:10164-103B2 76 years, female 154.1
Globus pallidus
Scaled Tags Per Million: 238.8
FF:10161-103A8 76 years, female 278.7
FF:10175-103C4 60 years, female 198.9
Nucleus accumbens
Scaled Tags Per Million: 273.1
FF:10037-101F1 23-56 years, mixed 273.1
Putamen
Scaled Tags Per Million: 177.8
FF:10176-103C5 60 years, female 177.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 114.9
Pig sample Sample description nTPM
Caudate
nTPM: 85.4
Samples: 4

Max nTPM: 89.6
Min nTPM: 81.6
Sample A Female 86.9
Sample B Female 83.6
Sample C Male 89.6
Sample D Male 81.6
Putamen
nTPM: 114.9
Samples: 4

Max nTPM: 145.1
Min nTPM: 87.6
Sample A Female 120.7
Sample B Female 87.6
Sample C Male 145.1
Sample D Male 106.3
Septum
nTPM: 101.4
Samples: 4

Max nTPM: 112.1
Min nTPM: 94.9
Sample A Female 102.1
Sample B Female 94.9
Sample C Male 112.1
Sample D Male 96.5
Ventral pallidum
nTPM: 105.9
Samples: 4

Max nTPM: 117.5
Min nTPM: 92.6
Sample A Female 92.6
Sample B Female 103.2
Sample C Male 117.5
Sample D Male 110.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 84.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 81.9
Samples: 4

Max nTPM: 84.5
Min nTPM: 76.5
Sample A Male 82.2
Sample B Male 76.5
Sample C Female 84.4
Sample D Female 84.5
Septum
nTPM: 84.7
Samples: 4

Max nTPM: 90.5
Min nTPM: 78.3
Sample A Male 87.7
Sample B Male 78.3
Sample C Female 82.1
Sample D Female 90.5
Ventral forebrain
nTPM: 81.9
Samples: 4

Max nTPM: 87.0
Min nTPM: 73.0
Sample A Male 82.0
Sample B Male 85.4
Sample C Female 73.0
Sample D Female 87.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.2
71211477 Antisense, RP_050816_01_F10, Mouse strain C57BL/6J (56 days, male) 3.6
71724852 Antisense, RP_050921_01_H01, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 2.5
71211477 Antisense, RP_050816_01_F10, Mouse strain C57BL/6J (56 days, male) 4.2
71724852 Antisense, RP_050921_01_H01, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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