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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:126.4 nTPM
GTEx:126.4 nTPM
FANTOM5:120.7 Scaled Tags Per Million
Pig:62.8 nTPM
Mouse:61.7 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 126.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 126.4
Samples: 105

Max nTPM: 197.9
Min nTPM: 81.3
Std nTPM: 23.9
Median nTPM:
414_1 84 years, female 197.9
413_1 59 years, female 197.7
43_1 64 years, female 184.0
466_1 57 years, female 176.1
491_1 89 years, female 176.0
142_1 61 years, female 174.1
162_1 79 years, female 171.4
415_1 77 years, female 169.9
490_1 67 years, female 166.5
149_1 88 years, male 163.9
324_1 76 years, male 156.2
32_1 67 years, male 155.2
501_1 88 years, male 155.1
89_1 63 years, male 155.0
404_1 82 years, female 152.9
81_1 67 years, male 151.6
126_1 63 years, male 150.6
265_1 87 years, male 147.2
316_1 62 years, male 146.0
117_1 61 years, male 143.9
139_1 64 years, female 143.8
288_1 66 years, female 142.9
499_1 55 years, female 142.6
307_1 66 years, female 142.1
315_1 62 years, female 140.7
348_1 84 years, male 140.0
468_1 89 years, male 137.8
145_1 84 years, male 137.4
2_1 77 years, female 136.1
396_1 62 years, male 133.4
6_1 73 years, female 132.9
229_1 69 years, female 132.9
217_1 76 years, male 132.4
115_1 83 years, male 131.3
251_1 78 years, male 129.8
18_1 88 years, male 129.1
246_1 77 years, male 129.1
375_1 74 years, female 128.2
314_1 67 years, male 127.7
447_1 81 years, male 127.7
405_1 91 years, male 127.6
254_1 77 years, female 127.5
321_1 62 years, female 127.2
172_1 72 years, female 126.9
335_1 73 years, female 126.8
406_1 79 years, male 126.7
177_1 74 years, male 126.5
153_1 70 years, female 126.4
311_1 78 years, male 126.4
318_1 68 years, male 126.3
379_1 60 years, male 126.1
322_1 76 years, male 125.8
120_1 70 years, female 125.7
386_1 76 years, male 124.2
137_1 83 years, male 123.4
266_1 85 years, male 123.0
189_1 76 years, male 122.4
526_1 61 years, male 122.0
109_1 81 years, female 121.7
389_1 86 years, female 121.4
41_1 94 years, female 121.3
503_1 68 years, male 121.3
17_1 71 years, male 121.0
286_1 68 years, female 120.9
425_1 59 years, female 120.6
353_1 82 years, female 120.1
480_1 63 years, male 119.6
313_1 79 years, female 119.1
495_1 57 years, female 118.6
292_1 71 years, male 117.2
376_1 75 years, female 115.9
264_1 73 years, female 115.5
291_1 76 years, male 114.2
9_1 66 years, female 113.8
518_1 75 years, female 113.4
354_1 81 years, female 112.6
35_1 74 years, female 112.1
295_1 61 years, female 111.7
163_1 78 years, male 111.2
320_1 89 years, female 109.5
4_1 88 years, female 109.4
308_1 70 years, female 109.0
517_1 88 years, male 109.0
377_1 82 years, female 106.9
173_1 67 years, male 106.8
350_1 84 years, female 106.8
317_1 60 years, male 104.5
119_1 70 years, female 104.1
394_1 75 years, female 102.4
352_1 62 years, male 102.3
384_1 83 years, male 102.2
347_1 72 years, male 101.5
349_1 83 years, male 101.0
243_1 75 years, male 99.5
452_1 88 years, female 99.1
319_1 81 years, male 98.2
355_1 70 years, female 93.3
293_1 68 years, female 92.7
506_1 65 years, male 90.7
237_1 82 years, male 90.1
218_1 71 years, female 87.4
351_1 91 years, male 87.2
99_1 64 years, male 83.6
356_1 87 years, female 82.4
42_1 85 years, male 81.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 120.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 120.7
FF:10030-101E3 24-65 years, mixed 120.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 62.8
Pig sample Sample description nTPM
Retina
nTPM: 62.8
Samples: 4

Max nTPM: 67.0
Min nTPM: 58.9
Sample A Female 59.4
Sample B Female 67.0
Sample C Male 58.9
Sample D Male 66.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 61.7
Mouse sample Sample description nTPM
Retina
nTPM: 61.8
Samples: 4

Max nTPM: 74.5
Min nTPM: 47.6
Sample A Male 65.9
Sample B Male 59.0
Sample C Female 47.6
Sample D Female 74.5

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