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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:13.5 nTPM
HPA:13.5 nTPM
GTEx:14.6 nTPM
FANTOM5:60.8 Scaled Tags Per Million
Pig:4.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 13.5
Sample id Sample description nTPM
Amygdala
nTPM: 13.5
2695 Female, age 67, right hemisphere 16.2
2514 Male, age 75, right hemisphere 14.7
1987 Female, age 91, left hemisphere 14.6
2814 Male, age 76, right hemisphere 11.5
2517 Female, age 94, left hemisphere 10.4
Basal amygdala
nTPM: 11.0
2827 Female, age 67, right hemisphere 12.5
1955 Male, age 76, both hemispheres 12.3
2110 Male, age 80, left hemisphere 11.5
2609 Male, age 75, right hemisphere 10.7
2243 Female, age 91, right hemisphere 10.4
2685 Female, age 94, left hemisphere 8.3
Central amygdala
nTPM: 10.9
2701 Female, age 91, right hemisphere 11.6
2515 Male, age 75, right hemisphere 11.1
2826 Female, age 94, left hemisphere 11.1
2239 Male, age 80, left hemisphere 10.6
1905 Male, age 76, both hemispheres 10.1
Corticomedial amygdala
nTPM: 12.6
2240 Male, age 76, both hemispheres 15.1
2242 Female, age 91, right hemisphere 13.1
2428 Male, age 75, right hemisphere 12.5
2535 Female, age 67, right hemisphere 12.4
2429 Female, age 94, left hemisphere 11.5
2829 Male, age 80, left hemisphere 11.0
Lateral amygdala
nTPM: 11.2
2830 Female, age 67, right hemisphere 14.0
2256 Male, age 80, left hemisphere 13.0
2255 Female, age 91, right hemisphere 12.0
1883 Male, age 76, both hemispheres 11.7
2534 Female, age 94, left hemisphere 9.0
2516 Male, age 75, right hemisphere 7.8
Stria terminalis, bed nucleus
nTPM: 8.7
2201 Male, age 74, unknown 10.5
1974 Female, age 91, both hemispheres 8.8
2486 Female, age 94, both hemispheres 6.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 14.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 14.6
Samples: 152

Max nTPM: 113.4
Min nTPM: 2.7
Std nTPM: 12.5
Median nTPM: 10.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 113.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 59.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 54.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 46.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 46.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 43.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 40.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 37.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 34.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 30.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 29.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 28.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 28.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 27.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 26.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 26.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 26.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 25.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 23.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 22.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 22.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 21.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 21.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 21.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 20.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 19.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 19.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 19.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 19.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 18.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 18.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 18.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 18.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 17.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 17.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 17.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 17.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 17.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 17.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 17.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 17.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 16.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 16.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 15.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 15.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 15.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 15.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 15.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 14.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 14.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 14.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 13.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 13.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 13.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 13.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 13.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 13.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 12.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 12.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 12.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 12.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 12.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 11.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 11.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 11.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 11.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 11.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 11.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 11.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 11.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 11.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 11.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 11.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 10.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 10.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 10.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 10.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 10.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 10.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 10.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 10.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 10.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 10.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 10.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 10.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 10.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 10.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 10.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 10.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 10.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 10.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 9.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 9.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 9.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 9.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 9.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 9.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 9.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 9.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 9.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 9.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 9.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 8.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 8.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 8.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 8.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 8.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 8.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 8.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 8.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 8.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 8.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 8.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 7.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 7.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 7.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 7.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 7.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 7.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 7.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 7.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 7.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 7.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 7.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 7.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 7.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 7.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 7.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 6.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 6.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 6.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 6.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 6.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 6.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 6.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 6.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 6.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 6.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 6.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 6.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 6.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 5.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 5.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 5.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 5.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 4.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 4.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 4.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 3.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 60.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 60.8
FF:10151-102I7 76 years, female 60.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4.8
Pig sample Sample description nTPM
Amygdala
nTPM: 4.8
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 4.9
Sample C Male 4.9
Sample D Male 5.4

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