BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:45.2 nTPM
HPA:45.2 nTPM
GTEx:41.0 nTPM
FANTOM5:84.3 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:99.2 nTPM
Allen mouse:3.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036921Antibody HPA036922
Glial cells LowLow
Neuronal cells HighMedium




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 45.0
2481 Female, age 94, left hemisphere 49.6
2288 Male, age 75, left hemisphere 48.7
1857 Female, age 85, left hemisphere 44.4
2846 Female, age 79, unknown 44.3
1854 Male, age 80, left hemisphere 44.1
1781 Male, age 74, unknown 43.7
2290 Female, age 72, unknown 43.0
2289 Male, age 61, right hemisphere 42.5
Claustrum
nTPM: 41.6
2392 Female, age 94, both hemispheres 44.4
1956 Male, age 74, unknown 43.2
2196 Female, age 79, unknown 42.4
2198 Male, age 80, both hemispheres 42.3
2491 Male, age 75, both hemispheres 42.0
2292 Female, age 85, both hemispheres 40.6
2284 Female, age 91, both hemispheres 40.4
2568 Male, age 61, both hemispheres 39.9
2645 Female, age 72, unknown 39.4
Globus pallidus, externus
nTPM: 42.5
2772 Female, age 79, unknown 48.0
1996 Male, age 80, right hemisphere 45.2
2395 Male, age 75, both hemispheres 42.7
2646 Male, age 61, right hemisphere 39.0
2567 Female, age 72, unknown 37.7
Globus pallidus, internus
nTPM: 43.8
2287 Male, age 75, right hemisphere 48.4
2483 Female, age 94, right hemisphere 45.8
2778 Female, age 91, both hemispheres 44.1
1818 Male, age 74, unknown 43.7
2037 Male, age 80, right hemisphere 43.4
2111 Female, age 85, right hemisphere 41.5
2566 Female, age 72, unknown 39.3
Nucleus accumbens
nTPM: 45.2
2286 Male, age 75, left hemisphere 48.3
2391 Female, age 94, left hemisphere 47.7
1856 Female, age 91, right hemisphere 47.0
2824 Male, age 61, right hemisphere 45.0
2698 Female, age 72, unknown 44.3
1806 Female, age 85, left hemisphere 44.1
1783 Male, age 74, unknown 44.0
2732 Male, age 80, right hemisphere 41.4
Nucleus basalis of Meynert
nTPM: 41.8
2393 Male, age 80, right hemisphere 43.0
2821 Male, age 75, both hemispheres 42.8
2484 Female, age 94, left hemisphere 42.1
2569 Male, age 61, both hemispheres 39.1
Nucleus of the diagonal band
nTPM: 45.1
1812 Female, age 91, both hemispheres 48.0
2775 Male, age 80, right hemisphere 46.4
2195 Female, age 85, both hemispheres 44.8
2029 Male, age 61, right hemisphere 44.2
1979 Male, age 74, unknown 42.0
Olfactory tubercle
nTPM: 44.1
1846 Male, age 80, right hemisphere 46.4
1998 Female, age 91, both hemispheres 44.6
2487 Female, age 94, left hemisphere 43.0
2856 Male, age 75, right hemisphere 42.4
Putamen
nTPM: 43.4
2482 Female, age 94, left hemisphere 47.1
2466 Female, age 79, unknown 45.6
1937 Female, age 91, right hemisphere 44.4
1829 Male, age 74, unknown 43.0
1838 Male, age 80, right hemisphere 42.8
2647 Male, age 75, left hemisphere 40.8
2489 Female, age 72, unknown 39.9
Septal nuclei
nTPM: 44.4
1960 Male, age 74, unknown 47.5
2031 Female, age 72, unknown 47.1
2009 Female, age 91, both hemispheres 44.8
2629 Female, age 94, right hemisphere 44.5
2394 Male, age 61, left hemisphere 43.1
2059 Female, age 85, both hemispheres 42.2
2199 Male, age 80, right hemisphere 41.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.7
Samples: 246

Max nTPM: 77.7
Min nTPM: 26.4
Std nTPM: 6.9
Median nTPM: 37.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 77.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 62.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 59.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 57.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 56.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 56.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 55.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 54.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 53.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 53.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 52.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.0
Samples: 246

Max nTPM: 73.9
Min nTPM: 26.5
Std nTPM: 7.4
Median nTPM: 39.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 73.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 70.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 68.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 68.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 67.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 59.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 59.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 58.8
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 57.3
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 57.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 56.4
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Brain - Putamen (basal ganglia)
Average nTPM: 41.0
Samples: 205

Max nTPM: 80.8
Min nTPM: 30.1
Std nTPM: 7.6
Median nTPM: 39.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 80.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 80.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 66.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 66.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 62.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 59.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 58.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 56.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 55.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 54.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 53.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 77.9
FF:10164-103B2 76 years, female 77.9
Globus pallidus
Scaled Tags Per Million: 79.5
FF:10175-103C4 60 years, female 82.8
FF:10161-103A8 76 years, female 76.2
Nucleus accumbens
Scaled Tags Per Million: 69.7
FF:10037-101F1 23-56 years, mixed 69.7
Putamen
Scaled Tags Per Million: 84.3
FF:10176-103C5 60 years, female 84.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.9
Pig sample Sample description nTPM
Caudate
nTPM: 21.0
Samples: 4

Max nTPM: 22.5
Min nTPM: 20.1
Sample A Female 21.0
Sample B Female 20.3
Sample C Male 22.5
Sample D Male 20.1
Putamen
nTPM: 23.5
Samples: 4

Max nTPM: 32.1
Min nTPM: 19.4
Sample A Female 21.0
Sample B Female 19.4
Sample C Male 32.1
Sample D Male 21.5
Septum
nTPM: 23.9
Samples: 4

Max nTPM: 26.3
Min nTPM: 21.0
Sample A Female 26.3
Sample B Female 21.0
Sample C Male 26.2
Sample D Male 22.2
Ventral pallidum
nTPM: 22.3
Samples: 4

Max nTPM: 24.1
Min nTPM: 19.2
Sample A Female 22.0
Sample B Female 24.1
Sample C Male 24.0
Sample D Male 19.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 99.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 85.9
Samples: 4

Max nTPM: 88.5
Min nTPM: 82.8
Sample A Male 88.5
Sample B Male 86.3
Sample C Female 82.8
Sample D Female 85.8
Septum
nTPM: 99.3
Samples: 4

Max nTPM: 105.6
Min nTPM: 92.3
Sample A Male 92.3
Sample B Male 104.2
Sample C Female 105.6
Sample D Female 94.9
Ventral forebrain
nTPM: 89.3
Samples: 4

Max nTPM: 98.8
Min nTPM: 82.8
Sample A Male 90.3
Sample B Male 82.8
Sample C Female 98.8
Sample D Female 85.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
68269288 Antisense, RP_041129_01_E07, Mouse strain C57BL/6J (56 days, male) 3.2
Pallidum
Expression energy: 2.7
68269288 Antisense, RP_041129_01_E07, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

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