MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:129.6 nTPM
HPA:129.6 nTPM
GTEx:164.1 nTPM
FANTOM5:270.8 Scaled Tags Per Million
Pig:28.2 nTPM
Mouse:108.4 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 129.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.8
1870 Female, age 42, unknown 130.1
2411 Female, age 72, unknown 124.1
1830 Male, age 51, unknown 122.6
2828 Female, age 72, unknown 120.6
2019 Male, age 18, unknown 120.1
1833 Male, age 53, unknown 120.0
2666 Male, age 74, left hemisphere 107.8
1827 Male, age 72, unknown 106.3
2219 Male, age 76, both hemispheres 102.7
2586 Male, age 75, left hemisphere 94.0
Dorsal raphe nucleus
nTPM: 123.4
2750 Male, age 76, both hemispheres 126.8
2016 Female, age 72, unknown 126.6
1828 Male, age 53, unknown 125.1
2298 Female, age 72, unknown 122.6
2047 Male, age 72, unknown 115.9
Inferior colliculus
nTPM: 113.5
1848 Female, age 42, unknown 117.7
2097 Female, age 72, unknown 114.6
1890 Male, age 53, unknown 111.5
2849 Male, age 72, unknown 110.1
Median raphe nucleus
nTPM: 118.9
2220 Male, age 76, midline 118.9
Pedunculopontine tegmental nucleus
nTPM: 129.6
2338 Male, age 61, both hemispheres 151.4
2334 Male, age 80, both hemispheres 124.9
1921 Female, age 85, both hemispheres 112.5
Periaquaductal grey, anterior
nTPM: 111.0
2502 Female, age 75, unknown 115.9
1795 Male, age 51, unknown 109.0
1947 Male, age 18, unknown 108.2
Periaquaductal grey, dorsal
nTPM: 121.2
2850 Male, age 76, both hemispheres 132.8
1831 Male, age 72, unknown 119.2
2464 Female, age 72, unknown 119.0
1840 Male, age 53, unknown 114.0
Periaquaductal grey, lateral
nTPM: 123.4
2140 Male, age 76, both hemispheres 127.0
2272 Male, age 74, both hemispheres 122.0
2053 Male, age 18, unknown 121.4
Pretectal area
nTPM: 112.4
2273 Male, age 74, both hemispheres 125.2
2316 Male, age 76, right hemisphere 121.3
2224 Female, age 72, unknown 117.4
2667 Female, age 75, unknown 114.7
2825 Male, age 18, unknown 114.3
1817 Female, age 42, unknown 113.4
1815 Male, age 53, unknown 111.1
1944 Female, age 72, unknown 107.0
2407 Male, age 75, both hemispheres 106.2
2007 Male, age 72, unknown 104.7
1816 Male, age 51, unknown 101.0
Red nucleus
nTPM: 128.7
1821 Female, age 72, unknown 145.6
1954 Female, age 42, unknown 145.0
1865 Male, age 51, unknown 141.6
2769 Male, age 72, unknown 139.7
2227 Male, age 72, unknown 137.6
1904 Male, age 53, unknown 134.1
2823 Male, age 76, right hemisphere 131.6
2503 Female, age 72, unknown 126.4
2785 Male, age 18, unknown 119.0
2725 Female, age 75, unknown 115.3
2588 Male, age 74, left hemisphere 106.7
2584 Male, age 75, left hemisphere 102.1
Substantia nigra
nTPM: 117.4
2699 Male, age 18, unknown 128.1
2409 Female, age 72, unknown 122.8
2590 Female, age 75, unknown 120.3
1851 Male, age 51, unknown 119.6
2241 Male, age 72, unknown 118.7
1941 Male, age 53, unknown 116.1
2665 Male, age 74, both hemispheres 115.0
1916 Female, age 42, unknown 114.5
1889 Female, age 72, unknown 113.5
2583 Male, age 75, right hemisphere 106.0
Superior colliculus
nTPM: 113.6
1913 Female, age 42, unknown 126.2
2587 Male, age 74, left hemisphere 125.7
1995 Male, age 72, unknown 122.6
1839 Male, age 51, unknown 115.6
1895 Male, age 76, right hemisphere 115.0
2668 Female, age 75, unknown 111.1
2087 Female, age 72, unknown 108.1
1796 Male, age 53, unknown 107.1
2261 Male, age 18, unknown 105.9
2664 Male, age 75, both hemispheres 98.7
Ventral tegmental area
nTPM: 122.7
2223 Female, age 72, unknown 131.6
2410 Female, age 72, unknown 126.0
2021 Male, age 53, unknown 125.2
1915 Female, age 42, unknown 122.3
2218 Male, age 76, both hemispheres 118.0
1942 Male, age 51, unknown 113.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 164.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 164.1
Samples: 139

Max nTPM: 311.7
Min nTPM: 75.7
Std nTPM: 47.2
Median nTPM: 154.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 311.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 305.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 299.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 282.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 279.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 277.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 249.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 247.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 241.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 239.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 233.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 270.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 270.8
FF:10158-103A5 76 years, female 270.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.2
Pig sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 70.9
Min nTPM: 10.3
Sample A Female 70.9
Sample B Female 18.3
Sample C Male 13.5
Sample D Male 10.3
Periaqueductal gray
nTPM: 21.6
Samples: 3

Max nTPM: 22.1
Min nTPM: 21.3
Sample B Female 21.3
Sample C Male 22.1
Sample D Male 21.4
Substantia nigra
nTPM: 26.2
Samples: 4

Max nTPM: 29.9
Min nTPM: 23.5
Sample A Female 29.9
Sample B Female 25.1
Sample C Male 23.5
Sample D Male 26.3
Superior colliculi
nTPM: 18.5
Samples: 4

Max nTPM: 23.9
Min nTPM: 16.2
Sample A Female 16.2
Sample B Female 23.9
Sample C Male 17.7
Sample D Male 16.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 108.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 108.4
Samples: 4

Max nTPM: 112.3
Min nTPM: 103.2
Sample A Male 112.3
Sample B Male 108.7
Sample C Female 103.2
Sample D Female 109.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
77454635 Antisense, RP_070129_01_B05, Mouse strain C57BL/6J (56 days, male) 4.4
79488933 Antisense, RP_070129_01_B05, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.