BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:35.7 nTPM
HPA:35.7 nTPM
GTEx:49.7 nTPM
FANTOM5:38.2 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA054776
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.1
2846 Female, age 79, unknown 36.6
1857 Female, age 85, left hemisphere 36.1
2290 Female, age 72, unknown 36.0
1854 Male, age 80, left hemisphere 35.3
2288 Male, age 75, left hemisphere 35.3
2481 Female, age 94, left hemisphere 34.3
2289 Male, age 61, right hemisphere 33.9
1781 Male, age 74, unknown 33.5
Claustrum
nTPM: 33.9
2196 Female, age 79, unknown 35.1
1956 Male, age 74, unknown 35.0
2198 Male, age 80, both hemispheres 34.8
2392 Female, age 94, both hemispheres 33.6
2491 Male, age 75, both hemispheres 33.5
2568 Male, age 61, both hemispheres 33.5
2284 Female, age 91, both hemispheres 33.3
2645 Female, age 72, unknown 33.3
2292 Female, age 85, both hemispheres 33.2
Globus pallidus, externus
nTPM: 33.4
2772 Female, age 79, unknown 34.4
1996 Male, age 80, right hemisphere 34.0
2395 Male, age 75, both hemispheres 33.3
2567 Female, age 72, unknown 33.0
2646 Male, age 61, right hemisphere 32.0
Globus pallidus, internus
nTPM: 33.7
2287 Male, age 75, right hemisphere 34.9
2483 Female, age 94, right hemisphere 34.1
2778 Female, age 91, both hemispheres 34.1
1818 Male, age 74, unknown 34.0
2566 Female, age 72, unknown 33.3
2037 Male, age 80, right hemisphere 32.8
2111 Female, age 85, right hemisphere 32.8
Nucleus accumbens
nTPM: 35.7
1856 Female, age 91, right hemisphere 38.3
2391 Female, age 94, left hemisphere 36.8
2698 Female, age 72, unknown 35.8
1783 Male, age 74, unknown 35.6
1806 Female, age 85, left hemisphere 35.6
2286 Male, age 75, left hemisphere 35.0
2824 Male, age 61, right hemisphere 34.9
2732 Male, age 80, right hemisphere 33.3
Nucleus basalis of Meynert
nTPM: 34.0
2821 Male, age 75, both hemispheres 35.9
2393 Male, age 80, right hemisphere 34.3
2484 Female, age 94, left hemisphere 33.8
2569 Male, age 61, both hemispheres 31.8
Nucleus of the diagonal band
nTPM: 34.6
2195 Female, age 85, both hemispheres 35.8
1812 Female, age 91, both hemispheres 35.3
1979 Male, age 74, unknown 34.5
2775 Male, age 80, right hemisphere 34.3
2029 Male, age 61, right hemisphere 32.9
Olfactory tubercle
nTPM: 34.2
1846 Male, age 80, right hemisphere 34.4
2856 Male, age 75, right hemisphere 34.4
1998 Female, age 91, both hemispheres 34.2
2487 Female, age 94, left hemisphere 33.9
Putamen
nTPM: 34.7
1838 Male, age 80, right hemisphere 36.0
1937 Female, age 91, right hemisphere 35.5
2482 Female, age 94, left hemisphere 35.4
1829 Male, age 74, unknown 35.3
2466 Female, age 79, unknown 33.9
2489 Female, age 72, unknown 33.8
2647 Male, age 75, left hemisphere 32.6
Septal nuclei
nTPM: 34.0
2629 Female, age 94, right hemisphere 35.3
2031 Female, age 72, unknown 34.4
1960 Male, age 74, unknown 34.1
2199 Male, age 80, right hemisphere 34.1
2059 Female, age 85, both hemispheres 33.8
2009 Female, age 91, both hemispheres 33.7
2394 Male, age 61, left hemisphere 32.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.8
Samples: 246

Max nTPM: 117.3
Min nTPM: 16.9
Std nTPM: 13.7
Median nTPM: 38.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 117.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 111.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 79.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 76.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 76.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 74.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 73.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 71.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 67.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 67.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 64.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.7
Samples: 246

Max nTPM: 102.3
Min nTPM: 21.6
Std nTPM: 13.6
Median nTPM: 48.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 102.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 101.4
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 101.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 96.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 82.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 82.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 75.8
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 75.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 75.3
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 74.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 74.5
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Brain - Putamen (basal ganglia)
Average nTPM: 41.4
Samples: 205

Max nTPM: 88.7
Min nTPM: 21.7
Std nTPM: 11.9
Median nTPM: 39.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 88.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 81.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 72.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 71.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 69.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 69.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 68.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 67.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 66.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 66.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 64.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.3
FF:10164-103B2 76 years, female 30.3
Globus pallidus
Scaled Tags Per Million: 38.2
FF:10175-103C4 60 years, female 52.8
FF:10161-103A8 76 years, female 23.6
Nucleus accumbens
Scaled Tags Per Million: 25.0
FF:10037-101F1 23-56 years, mixed 25.0
Putamen
Scaled Tags Per Million: 37.5
FF:10176-103C5 60 years, female 37.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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