MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:8.9 nTPM
HPA:8.9 nTPM
GTEx:14.7 nTPM
FANTOM5:23.1 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:33.4 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.4
2828 Female, age 72, unknown 8.4
1827 Male, age 72, unknown 8.1
1870 Female, age 42, unknown 7.7
2586 Male, age 75, left hemisphere 7.5
1830 Male, age 51, unknown 7.2
1833 Male, age 53, unknown 7.2
2019 Male, age 18, unknown 7.1
2411 Female, age 72, unknown 7.1
2219 Male, age 76, both hemispheres 7.0
2666 Male, age 74, left hemisphere 6.9
Dorsal raphe nucleus
nTPM: 8.2
2298 Female, age 72, unknown 9.0
2016 Female, age 72, unknown 8.6
1828 Male, age 53, unknown 8.3
2047 Male, age 72, unknown 8.2
2750 Male, age 76, both hemispheres 6.9
Inferior colliculus
nTPM: 8.9
2097 Female, age 72, unknown 9.5
1848 Female, age 42, unknown 8.9
1890 Male, age 53, unknown 8.7
2849 Male, age 72, unknown 8.5
Median raphe nucleus
nTPM: 7.3
2220 Male, age 76, midline 7.3
Pedunculopontine tegmental nucleus
nTPM: 6.9
1921 Female, age 85, both hemispheres 7.4
2334 Male, age 80, both hemispheres 7.0
2338 Male, age 61, both hemispheres 6.4
Periaquaductal grey, anterior
nTPM: 7.7
1795 Male, age 51, unknown 8.1
2502 Female, age 75, unknown 7.7
1947 Male, age 18, unknown 7.4
Periaquaductal grey, dorsal
nTPM: 8.1
1840 Male, age 53, unknown 8.6
2464 Female, age 72, unknown 8.2
1831 Male, age 72, unknown 7.7
2850 Male, age 76, both hemispheres 7.7
Periaquaductal grey, lateral
nTPM: 7.9
2053 Male, age 18, unknown 8.4
2272 Male, age 74, both hemispheres 7.8
2140 Male, age 76, both hemispheres 7.5
Pretectal area
nTPM: 7.8
2825 Male, age 18, unknown 8.8
2273 Male, age 74, both hemispheres 8.5
1816 Male, age 51, unknown 8.4
2667 Female, age 75, unknown 8.4
2224 Female, age 72, unknown 8.2
1944 Female, age 72, unknown 7.9
2316 Male, age 76, right hemisphere 7.8
2407 Male, age 75, both hemispheres 7.3
1815 Male, age 53, unknown 7.2
1817 Female, age 42, unknown 7.1
2007 Male, age 72, unknown 6.8
Red nucleus
nTPM: 7.3
2725 Female, age 75, unknown 8.2
2503 Female, age 72, unknown 7.8
1954 Female, age 42, unknown 7.6
1821 Female, age 72, unknown 7.5
2588 Male, age 74, left hemisphere 7.5
2769 Male, age 72, unknown 7.5
2227 Male, age 72, unknown 7.4
2823 Male, age 76, right hemisphere 7.2
2584 Male, age 75, left hemisphere 7.0
1865 Male, age 51, unknown 6.8
1904 Male, age 53, unknown 6.5
2785 Male, age 18, unknown 6.2
Substantia nigra
nTPM: 7.7
1941 Male, age 53, unknown 8.9
2665 Male, age 74, both hemispheres 8.2
2583 Male, age 75, right hemisphere 8.0
2241 Male, age 72, unknown 7.9
2699 Male, age 18, unknown 7.6
1916 Female, age 42, unknown 7.5
2409 Female, age 72, unknown 7.5
2590 Female, age 75, unknown 7.3
1851 Male, age 51, unknown 7.2
1889 Female, age 72, unknown 7.0
Superior colliculus
nTPM: 7.9
2664 Male, age 75, both hemispheres 8.9
2087 Female, age 72, unknown 8.6
2261 Male, age 18, unknown 8.5
1839 Male, age 51, unknown 8.2
1995 Male, age 72, unknown 8.1
1895 Male, age 76, right hemisphere 7.8
1796 Male, age 53, unknown 7.6
2587 Male, age 74, left hemisphere 7.3
1913 Female, age 42, unknown 7.1
2668 Female, age 75, unknown 6.8
Ventral tegmental area
nTPM: 7.3
2223 Female, age 72, unknown 8.0
1915 Female, age 42, unknown 7.6
2021 Male, age 53, unknown 7.6
1942 Male, age 51, unknown 7.4
2218 Male, age 76, both hemispheres 6.8
2410 Female, age 72, unknown 6.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 139

Max nTPM: 41.0
Min nTPM: 3.8
Std nTPM: 6.2
Median nTPM: 13.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 41.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 35.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 31.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 29.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 29.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 27.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 27.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 26.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 25.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 24.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.1
FF:10158-103A5 76 years, female 23.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 21.3
Min nTPM: 10.1
Sample A Female 21.3
Sample B Female 12.5
Sample C Male 12.7
Sample D Male 10.1
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 11.1
Min nTPM: 10.5
Sample B Female 10.5
Sample C Male 10.5
Sample D Male 11.1
Substantia nigra
nTPM: 15.0
Samples: 4

Max nTPM: 18.4
Min nTPM: 12.2
Sample A Female 16.4
Sample B Female 18.4
Sample C Male 12.2
Sample D Male 12.8
Superior colliculi
nTPM: 24.7
Samples: 4

Max nTPM: 49.0
Min nTPM: 11.8
Sample A Female 25.5
Sample B Female 49.0
Sample C Male 12.3
Sample D Male 11.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 38.0
Min nTPM: 31.5
Sample A Male 38.0
Sample B Male 31.7
Sample C Female 32.4
Sample D Female 31.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
1652 Antisense, RP_040604_01_D10, Mouse strain C57BL/6J (56 days, male) 0.8
1651 Antisense, RP_040604_01_D10, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.