MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11.5 nTPM
HPA:11.5 nTPM
GTEx:9.2 nTPM
FANTOM5:23.7 Scaled Tags Per Million
Pig:6.8 nTPM
Mouse:11.4 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.9
2219 Male, age 76, both hemispheres 13.5
1870 Female, age 42, unknown 11.2
2411 Female, age 72, unknown 11.1
1827 Male, age 72, unknown 10.7
1830 Male, age 51, unknown 10.7
1833 Male, age 53, unknown 10.6
2828 Female, age 72, unknown 10.6
2666 Male, age 74, left hemisphere 10.3
2586 Male, age 75, left hemisphere 10.2
2019 Male, age 18, unknown 10.0
Dorsal raphe nucleus
nTPM: 10.7
2298 Female, age 72, unknown 11.8
1828 Male, age 53, unknown 10.8
2016 Female, age 72, unknown 10.5
2750 Male, age 76, both hemispheres 10.2
2047 Male, age 72, unknown 10.0
Inferior colliculus
nTPM: 11.5
2097 Female, age 72, unknown 12.3
1890 Male, age 53, unknown 11.8
1848 Female, age 42, unknown 11.2
2849 Male, age 72, unknown 10.6
Median raphe nucleus
nTPM: 9.6
2220 Male, age 76, midline 9.6
Pedunculopontine tegmental nucleus
nTPM: 10.7
1921 Female, age 85, both hemispheres 11.3
2334 Male, age 80, both hemispheres 10.6
2338 Male, age 61, both hemispheres 10.2
Periaquaductal grey, anterior
nTPM: 11.1
1947 Male, age 18, unknown 11.5
2502 Female, age 75, unknown 11.2
1795 Male, age 51, unknown 10.5
Periaquaductal grey, dorsal
nTPM: 10.9
2464 Female, age 72, unknown 11.6
1831 Male, age 72, unknown 11.0
1840 Male, age 53, unknown 10.7
2850 Male, age 76, both hemispheres 10.2
Periaquaductal grey, lateral
nTPM: 10.2
2053 Male, age 18, unknown 11.0
2140 Male, age 76, both hemispheres 10.0
2272 Male, age 74, both hemispheres 9.8
Pretectal area
nTPM: 10.8
2224 Female, age 72, unknown 12.0
2316 Male, age 76, right hemisphere 11.3
1944 Female, age 72, unknown 11.1
2825 Male, age 18, unknown 11.0
1817 Female, age 42, unknown 10.9
1816 Male, age 51, unknown 10.7
2007 Male, age 72, unknown 10.7
1815 Male, age 53, unknown 10.6
2667 Female, age 75, unknown 10.5
2273 Male, age 74, both hemispheres 10.0
2407 Male, age 75, both hemispheres 10.0
Red nucleus
nTPM: 11.0
1821 Female, age 72, unknown 12.3
1954 Female, age 42, unknown 12.2
2227 Male, age 72, unknown 11.5
1904 Male, age 53, unknown 11.4
2769 Male, age 72, unknown 11.4
1865 Male, age 51, unknown 11.2
2503 Female, age 72, unknown 10.7
2725 Female, age 75, unknown 10.5
2785 Male, age 18, unknown 10.5
2584 Male, age 75, left hemisphere 10.4
2823 Male, age 76, right hemisphere 10.1
2588 Male, age 74, left hemisphere 9.6
Substantia nigra
nTPM: 10.1
2409 Female, age 72, unknown 11.8
1889 Female, age 72, unknown 10.9
2590 Female, age 75, unknown 10.6
2583 Male, age 75, right hemisphere 10.3
2241 Male, age 72, unknown 10.0
1941 Male, age 53, unknown 9.8
1851 Male, age 51, unknown 9.7
1916 Female, age 42, unknown 9.4
2699 Male, age 18, unknown 9.3
2665 Male, age 74, both hemispheres 9.2
Superior colliculus
nTPM: 11.2
2261 Male, age 18, unknown 11.9
2087 Female, age 72, unknown 11.7
1913 Female, age 42, unknown 11.6
1995 Male, age 72, unknown 11.6
1839 Male, age 51, unknown 11.3
2668 Female, age 75, unknown 11.2
1796 Male, age 53, unknown 10.9
1895 Male, age 76, right hemisphere 10.9
2664 Male, age 75, both hemispheres 10.3
2587 Male, age 74, left hemisphere 10.1
Ventral tegmental area
nTPM: 10.2
1942 Male, age 51, unknown 10.9
2021 Male, age 53, unknown 10.4
2223 Female, age 72, unknown 10.3
2218 Male, age 76, both hemispheres 10.1
2410 Female, age 72, unknown 10.0
1915 Female, age 42, unknown 9.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.2
Samples: 139

Max nTPM: 14.5
Min nTPM: 4.8
Std nTPM: 2.0
Median nTPM: 9.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 14.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 13.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 13.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 12.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 12.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 12.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 12.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 12.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 12.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 12.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.7
FF:10158-103A5 76 years, female 23.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.8
Pig sample Sample description nTPM
Midbrain
nTPM: 4.6
Samples: 4

Max nTPM: 7.1
Min nTPM: 3.2
Sample A Female 4.8
Sample B Female 3.2
Sample C Male 7.1
Sample D Male 3.3
Periaqueductal gray
nTPM: 3.1
Samples: 3

Max nTPM: 3.4
Min nTPM: 2.6
Sample B Female 2.6
Sample C Male 3.4
Sample D Male 3.2
Substantia nigra
nTPM: 4.1
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.0
Sample A Female 4.7
Sample B Female 4.5
Sample C Male 4.3
Sample D Male 3.0
Superior colliculi
nTPM: 6.8
Samples: 4

Max nTPM: 10.2
Min nTPM: 4.1
Sample A Female 5.1
Sample B Female 10.2
Sample C Male 7.6
Sample D Male 4.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 12.2
Min nTPM: 10.9
Sample A Male 12.2
Sample B Male 11.6
Sample C Female 10.9
Sample D Female 11.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
70431217 Antisense, RP_050614_02_D07, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.