MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.5 nTPM
HPA:56.5 nTPM
GTEx:42.0 nTPM
FANTOM5:93.2 Scaled Tags Per Million
Pig:47.9 nTPM
Mouse:39.7 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.0
2411 Female, age 72, unknown 57.2
1830 Male, age 51, unknown 57.0
1870 Female, age 42, unknown 56.6
1833 Male, age 53, unknown 56.5
2219 Male, age 76, both hemispheres 55.5
2019 Male, age 18, unknown 55.0
1827 Male, age 72, unknown 54.4
2666 Male, age 74, left hemisphere 53.6
2828 Female, age 72, unknown 53.5
2586 Male, age 75, left hemisphere 51.2
Dorsal raphe nucleus
nTPM: 55.0
2750 Male, age 76, both hemispheres 56.8
2016 Female, age 72, unknown 55.4
1828 Male, age 53, unknown 54.6
2298 Female, age 72, unknown 54.4
2047 Male, age 72, unknown 54.0
Inferior colliculus
nTPM: 54.9
2097 Female, age 72, unknown 55.6
1890 Male, age 53, unknown 55.1
1848 Female, age 42, unknown 54.8
2849 Male, age 72, unknown 54.1
Median raphe nucleus
nTPM: 55.6
2220 Male, age 76, midline 55.6
Pedunculopontine tegmental nucleus
nTPM: 56.2
2334 Male, age 80, both hemispheres 56.5
2338 Male, age 61, both hemispheres 56.2
1921 Female, age 85, both hemispheres 55.9
Periaquaductal grey, anterior
nTPM: 54.7
1947 Male, age 18, unknown 55.9
2502 Female, age 75, unknown 55.1
1795 Male, age 51, unknown 53.2
Periaquaductal grey, dorsal
nTPM: 55.6
2464 Female, age 72, unknown 56.6
2850 Male, age 76, both hemispheres 56.1
1831 Male, age 72, unknown 54.9
1840 Male, age 53, unknown 54.8
Periaquaductal grey, lateral
nTPM: 56.0
2272 Male, age 74, both hemispheres 56.5
2053 Male, age 18, unknown 55.9
2140 Male, age 76, both hemispheres 55.6
Pretectal area
nTPM: 55.1
2316 Male, age 76, right hemisphere 57.4
2273 Male, age 74, both hemispheres 56.9
2224 Female, age 72, unknown 55.4
2667 Female, age 75, unknown 55.4
1815 Male, age 53, unknown 55.3
1944 Female, age 72, unknown 55.0
2825 Male, age 18, unknown 54.9
2407 Male, age 75, both hemispheres 54.1
1816 Male, age 51, unknown 54.0
1817 Female, age 42, unknown 53.9
2007 Male, age 72, unknown 53.9
Red nucleus
nTPM: 56.5
2503 Female, age 72, unknown 58.1
1904 Male, age 53, unknown 57.6
1865 Male, age 51, unknown 57.4
1954 Female, age 42, unknown 57.3
1821 Female, age 72, unknown 57.2
2823 Male, age 76, right hemisphere 56.9
2227 Male, age 72, unknown 56.6
2725 Female, age 75, unknown 56.5
2769 Male, age 72, unknown 56.1
2588 Male, age 74, left hemisphere 55.8
2785 Male, age 18, unknown 55.2
2584 Male, age 75, left hemisphere 53.0
Substantia nigra
nTPM: 55.2
2241 Male, age 72, unknown 60.1
1941 Male, age 53, unknown 55.4
1916 Female, age 42, unknown 55.1
1851 Male, age 51, unknown 55.0
1889 Female, age 72, unknown 55.0
2699 Male, age 18, unknown 54.9
2409 Female, age 72, unknown 54.7
2590 Female, age 75, unknown 54.4
2665 Male, age 74, both hemispheres 53.9
2583 Male, age 75, right hemisphere 53.3
Superior colliculus
nTPM: 55.3
1913 Female, age 42, unknown 57.4
1895 Male, age 76, right hemisphere 56.6
2087 Female, age 72, unknown 55.8
1995 Male, age 72, unknown 55.5
2261 Male, age 18, unknown 55.5
2668 Female, age 75, unknown 55.1
1839 Male, age 51, unknown 54.8
2587 Male, age 74, left hemisphere 54.5
1796 Male, age 53, unknown 53.8
2664 Male, age 75, both hemispheres 53.8
Ventral tegmental area
nTPM: 55.4
2223 Female, age 72, unknown 56.7
1942 Male, age 51, unknown 55.7
1915 Female, age 42, unknown 55.1
2410 Female, age 72, unknown 55.1
2218 Male, age 76, both hemispheres 54.8
2021 Male, age 53, unknown 54.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.0
Samples: 139

Max nTPM: 100.7
Min nTPM: 18.6
Std nTPM: 13.1
Median nTPM: 39.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 100.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 99.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 88.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 73.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 71.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 69.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 66.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 65.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 63.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 62.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 59.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.2
FF:10158-103A5 76 years, female 93.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.9
Pig sample Sample description nTPM
Midbrain
nTPM: 40.4
Samples: 4

Max nTPM: 45.0
Min nTPM: 33.0
Sample A Female 42.0
Sample B Female 45.0
Sample C Male 33.0
Sample D Male 41.5
Periaqueductal gray
nTPM: 47.9
Samples: 3

Max nTPM: 52.6
Min nTPM: 43.8
Sample B Female 47.2
Sample C Male 43.8
Sample D Male 52.6
Substantia nigra
nTPM: 40.0
Samples: 4

Max nTPM: 44.6
Min nTPM: 36.7
Sample A Female 36.7
Sample B Female 41.8
Sample C Male 36.7
Sample D Male 44.6
Superior colliculi
nTPM: 38.1
Samples: 4

Max nTPM: 41.2
Min nTPM: 33.6
Sample A Female 37.8
Sample B Female 39.7
Sample C Male 33.6
Sample D Male 41.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 42.3
Min nTPM: 37.9
Sample A Male 37.9
Sample B Male 38.8
Sample C Female 39.9
Sample D Female 42.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
69549647 Antisense, RP_050310_02_C06, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.