BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:58.2 nTPM
HPA:58.2 nTPM
GTEx:40.9 nTPM
FANTOM5:79.2 Scaled Tags Per Million
Pig:45.7 nTPM
Mouse:33.6 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA054018
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 55.7
2481 Female, age 94, left hemisphere 57.3
2846 Female, age 79, unknown 56.5
2288 Male, age 75, left hemisphere 56.2
2290 Female, age 72, unknown 56.0
1854 Male, age 80, left hemisphere 55.5
1857 Female, age 85, left hemisphere 55.1
2289 Male, age 61, right hemisphere 54.7
1781 Male, age 74, unknown 54.1
Claustrum
nTPM: 55.4
2392 Female, age 94, both hemispheres 57.9
2491 Male, age 75, both hemispheres 56.5
1956 Male, age 74, unknown 56.1
2198 Male, age 80, both hemispheres 55.9
2292 Female, age 85, both hemispheres 55.6
2284 Female, age 91, both hemispheres 55.5
2196 Female, age 79, unknown 54.6
2645 Female, age 72, unknown 54.5
2568 Male, age 61, both hemispheres 52.2
Globus pallidus, externus
nTPM: 55.8
2395 Male, age 75, both hemispheres 58.1
2567 Female, age 72, unknown 57.0
2772 Female, age 79, unknown 55.2
1996 Male, age 80, right hemisphere 54.9
2646 Male, age 61, right hemisphere 53.7
Globus pallidus, internus
nTPM: 58.2
2111 Female, age 85, right hemisphere 61.5
2287 Male, age 75, right hemisphere 60.1
2778 Female, age 91, both hemispheres 60.0
2566 Female, age 72, unknown 57.7
2483 Female, age 94, right hemisphere 56.4
1818 Male, age 74, unknown 56.3
2037 Male, age 80, right hemisphere 55.6
Nucleus accumbens
nTPM: 56.4
2824 Male, age 61, right hemisphere 57.9
2391 Female, age 94, left hemisphere 57.7
2732 Male, age 80, right hemisphere 56.8
2286 Male, age 75, left hemisphere 56.2
1783 Male, age 74, unknown 56.0
2698 Female, age 72, unknown 55.6
1856 Female, age 91, right hemisphere 55.4
1806 Female, age 85, left hemisphere 55.3
Nucleus basalis of Meynert
nTPM: 54.9
2393 Male, age 80, right hemisphere 57.3
2821 Male, age 75, both hemispheres 55.5
2484 Female, age 94, left hemisphere 55.0
2569 Male, age 61, both hemispheres 51.6
Nucleus of the diagonal band
nTPM: 54.8
1979 Male, age 74, unknown 55.7
2775 Male, age 80, right hemisphere 55.0
2195 Female, age 85, both hemispheres 54.8
1812 Female, age 91, both hemispheres 54.3
2029 Male, age 61, right hemisphere 54.1
Olfactory tubercle
nTPM: 55.2
2487 Female, age 94, left hemisphere 56.0
1846 Male, age 80, right hemisphere 55.4
2856 Male, age 75, right hemisphere 55.3
1998 Female, age 91, both hemispheres 54.1
Putamen
nTPM: 55.3
1937 Female, age 91, right hemisphere 56.9
1829 Male, age 74, unknown 56.3
2482 Female, age 94, left hemisphere 56.0
2466 Female, age 79, unknown 55.7
1838 Male, age 80, right hemisphere 54.5
2647 Male, age 75, left hemisphere 54.2
2489 Female, age 72, unknown 53.8
Septal nuclei
nTPM: 54.6
2199 Male, age 80, right hemisphere 56.6
2394 Male, age 61, left hemisphere 56.0
1960 Male, age 74, unknown 54.3
2031 Female, age 72, unknown 54.3
2009 Female, age 91, both hemispheres 54.1
2629 Female, age 94, right hemisphere 53.6
2059 Female, age 85, both hemispheres 53.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.0
Samples: 246

Max nTPM: 72.4
Min nTPM: 19.6
Std nTPM: 8.0
Median nTPM: 40.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 72.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 65.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 59.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 58.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 57.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 57.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 57.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 56.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 55.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 54.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 54.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.9
Samples: 246

Max nTPM: 80.7
Min nTPM: 19.0
Std nTPM: 9.8
Median nTPM: 40.2
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 80.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 78.4
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 71.5
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 67.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 65.5
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 64.0
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 61.0
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 60.1
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 60.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 59.4
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 58.9
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Brain - Putamen (basal ganglia)
Average nTPM: 39.4
Samples: 205

Max nTPM: 62.3
Min nTPM: 22.5
Std nTPM: 8.0
Median nTPM: 39.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 62.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 60.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 59.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 57.4
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 56.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 55.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 55.2
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 54.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 54.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 54.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 53.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 69.1
FF:10164-103B2 76 years, female 69.1
Globus pallidus
Scaled Tags Per Million: 79.2
FF:10161-103A8 76 years, female 93.7
FF:10175-103C4 60 years, female 64.7
Nucleus accumbens
Scaled Tags Per Million: 57.2
FF:10037-101F1 23-56 years, mixed 57.2
Putamen
Scaled Tags Per Million: 71.5
FF:10176-103C5 60 years, female 71.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.7
Pig sample Sample description nTPM
Caudate
nTPM: 41.2
Samples: 4

Max nTPM: 48.2
Min nTPM: 38.0
Sample A Female 48.2
Sample B Female 39.8
Sample C Male 38.0
Sample D Male 38.8
Putamen
nTPM: 45.8
Samples: 4

Max nTPM: 48.4
Min nTPM: 43.7
Sample A Female 48.4
Sample B Female 43.7
Sample C Male 46.8
Sample D Male 44.1
Septum
nTPM: 45.7
Samples: 4

Max nTPM: 51.4
Min nTPM: 39.9
Sample A Female 47.1
Sample B Female 44.3
Sample C Male 39.9
Sample D Male 51.4
Ventral pallidum
nTPM: 42.6
Samples: 4

Max nTPM: 47.5
Min nTPM: 35.5
Sample A Female 43.4
Sample B Female 43.9
Sample C Male 35.5
Sample D Male 47.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.1
Samples: 4

Max nTPM: 40.1
Min nTPM: 29.6
Sample A Male 29.6
Sample B Male 29.9
Sample C Female 40.1
Sample D Female 32.6
Septum
nTPM: 33.6
Samples: 4

Max nTPM: 37.9
Min nTPM: 27.5
Sample A Male 27.5
Sample B Male 35.5
Sample C Female 37.9
Sample D Female 33.6
Ventral forebrain
nTPM: 30.7
Samples: 4

Max nTPM: 34.3
Min nTPM: 28.0
Sample A Male 28.6
Sample B Male 28.0
Sample C Female 31.7
Sample D Female 34.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69549647 Antisense, RP_050310_02_C06, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.7
69549647 Antisense, RP_050310_02_C06, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

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