MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:803.8 nTPM
HPA:803.8 nTPM
GTEx:948.9 nTPM
FANTOM5:33.6 Scaled Tags Per Million
Mouse:937.9 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 803.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 793.9
2411 Female, age 72, unknown 813.7
2666 Male, age 74, left hemisphere 805.9
1870 Female, age 42, unknown 801.8
2586 Male, age 75, left hemisphere 801.6
2219 Male, age 76, both hemispheres 792.1
2828 Female, age 72, unknown 790.7
1833 Male, age 53, unknown 790.2
1827 Male, age 72, unknown 785.0
1830 Male, age 51, unknown 782.9
2019 Male, age 18, unknown 775.5
Dorsal raphe nucleus
nTPM: 789.6
2016 Female, age 72, unknown 803.8
2298 Female, age 72, unknown 796.5
1828 Male, age 53, unknown 785.3
2750 Male, age 76, both hemispheres 785.2
2047 Male, age 72, unknown 777.0
Inferior colliculus
nTPM: 783.1
1890 Male, age 53, unknown 791.4
2849 Male, age 72, unknown 782.0
2097 Female, age 72, unknown 779.9
1848 Female, age 42, unknown 779.0
Median raphe nucleus
nTPM: 780.2
2220 Male, age 76, midline 780.2
Pedunculopontine tegmental nucleus
nTPM: 787.2
2334 Male, age 80, both hemispheres 804.1
2338 Male, age 61, both hemispheres 788.3
1921 Female, age 85, both hemispheres 769.3
Periaquaductal grey, anterior
nTPM: 788.8
2502 Female, age 75, unknown 810.9
1795 Male, age 51, unknown 780.4
1947 Male, age 18, unknown 775.1
Periaquaductal grey, dorsal
nTPM: 787.9
1840 Male, age 53, unknown 797.7
1831 Male, age 72, unknown 789.7
2464 Female, age 72, unknown 786.4
2850 Male, age 76, both hemispheres 777.6
Periaquaductal grey, lateral
nTPM: 778.7
2053 Male, age 18, unknown 808.2
2140 Male, age 76, both hemispheres 768.4
2272 Male, age 74, both hemispheres 759.6
Pretectal area
nTPM: 775.0
1815 Male, age 53, unknown 790.0
2825 Male, age 18, unknown 787.0
2224 Female, age 72, unknown 786.9
1817 Female, age 42, unknown 783.0
2316 Male, age 76, right hemisphere 782.8
2407 Male, age 75, both hemispheres 773.0
2007 Male, age 72, unknown 768.1
1944 Female, age 72, unknown 767.9
2273 Male, age 74, both hemispheres 764.9
1816 Male, age 51, unknown 761.0
2667 Female, age 75, unknown 760.0
Red nucleus
nTPM: 802.7
2503 Female, age 72, unknown 834.3
1865 Male, age 51, unknown 827.4
1821 Female, age 72, unknown 820.6
1904 Male, age 53, unknown 813.2
2769 Male, age 72, unknown 809.2
2227 Male, age 72, unknown 807.6
2725 Female, age 75, unknown 802.0
2588 Male, age 74, left hemisphere 794.1
1954 Female, age 42, unknown 792.6
2584 Male, age 75, left hemisphere 791.9
2785 Male, age 18, unknown 772.0
2823 Male, age 76, right hemisphere 767.4
Substantia nigra
nTPM: 802.5
2699 Male, age 18, unknown 848.2
2665 Male, age 74, both hemispheres 833.2
1851 Male, age 51, unknown 832.5
2409 Female, age 72, unknown 799.6
1916 Female, age 42, unknown 798.6
2590 Female, age 75, unknown 793.4
2241 Male, age 72, unknown 788.4
1889 Female, age 72, unknown 787.7
2583 Male, age 75, right hemisphere 774.2
1941 Male, age 53, unknown 769.1
Superior colliculus
nTPM: 792.5
2587 Male, age 74, left hemisphere 824.7
1913 Female, age 42, unknown 821.2
1995 Male, age 72, unknown 820.8
2668 Female, age 75, unknown 793.1
1839 Male, age 51, unknown 791.0
1796 Male, age 53, unknown 789.4
2664 Male, age 75, both hemispheres 778.8
2261 Male, age 18, unknown 772.0
1895 Male, age 76, right hemisphere 770.4
2087 Female, age 72, unknown 763.7
Ventral tegmental area
nTPM: 803.8
1915 Female, age 42, unknown 825.3
2410 Female, age 72, unknown 819.7
2223 Female, age 72, unknown 813.1
2021 Male, age 53, unknown 799.4
1942 Male, age 51, unknown 787.5
2218 Male, age 76, both hemispheres 777.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 948.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 948.9
Samples: 139

Max nTPM: 3017.9
Min nTPM: 382.0
Std nTPM: 382.3
Median nTPM: 860.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3017.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2556.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1970.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1726.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1704.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1700.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1663.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1661.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1608.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1603.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1541.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.6
FF:10158-103A5 76 years, female 33.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 937.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 937.9
Samples: 4

Max nTPM: 1032.8
Min nTPM: 858.4
Sample A Male 1032.8
Sample B Male 879.3
Sample C Female 858.4
Sample D Female 981.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
69012777 Antisense, RP_050309_01_E01, Mouse strain C57BL/6J (56 days, male) 10.1

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The Human Protein Atlas project is funded
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