BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:53.2 nTPM
HPA:53.2 nTPM
GTEx:54.1 nTPM
FANTOM5:71.3 Scaled Tags Per Million
Mouse:86.9 nTPM
Allen mouse:15.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA064535Antibody CAB008909
Glial cells Not detectedMedium
Neuronal cells MediumHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.1
1857 Female, age 85, left hemisphere 52.7
1854 Male, age 80, left hemisphere 50.0
2846 Female, age 79, unknown 49.4
2290 Female, age 72, unknown 48.3
1781 Male, age 74, unknown 48.0
2288 Male, age 75, left hemisphere 45.3
2289 Male, age 61, right hemisphere 43.9
2481 Female, age 94, left hemisphere 39.5
Claustrum
nTPM: 48.2
2568 Male, age 61, both hemispheres 53.4
2198 Male, age 80, both hemispheres 52.5
2491 Male, age 75, both hemispheres 51.3
2284 Female, age 91, both hemispheres 48.4
2196 Female, age 79, unknown 47.4
2392 Female, age 94, both hemispheres 47.0
2645 Female, age 72, unknown 46.3
1956 Male, age 74, unknown 45.4
2292 Female, age 85, both hemispheres 42.2
Globus pallidus, externus
nTPM: 39.6
2395 Male, age 75, both hemispheres 43.6
2772 Female, age 79, unknown 42.7
2646 Male, age 61, right hemisphere 38.7
1996 Male, age 80, right hemisphere 37.7
2567 Female, age 72, unknown 35.2
Globus pallidus, internus
nTPM: 39.0
2287 Male, age 75, right hemisphere 43.7
1818 Male, age 74, unknown 40.2
2483 Female, age 94, right hemisphere 40.1
2778 Female, age 91, both hemispheres 39.2
2037 Male, age 80, right hemisphere 38.3
2566 Female, age 72, unknown 36.5
2111 Female, age 85, right hemisphere 35.2
Nucleus accumbens
nTPM: 49.3
1856 Female, age 91, right hemisphere 63.1
1806 Female, age 85, left hemisphere 54.9
1783 Male, age 74, unknown 52.3
2824 Male, age 61, right hemisphere 50.3
2698 Female, age 72, unknown 48.8
2286 Male, age 75, left hemisphere 45.1
2732 Male, age 80, right hemisphere 40.7
2391 Female, age 94, left hemisphere 39.2
Nucleus basalis of Meynert
nTPM: 42.3
2393 Male, age 80, right hemisphere 44.1
2484 Female, age 94, left hemisphere 43.2
2821 Male, age 75, both hemispheres 43.2
2569 Male, age 61, both hemispheres 38.8
Nucleus of the diagonal band
nTPM: 53.2
1812 Female, age 91, both hemispheres 58.0
2775 Male, age 80, right hemisphere 56.8
2195 Female, age 85, both hemispheres 53.9
2029 Male, age 61, right hemisphere 53.5
1979 Male, age 74, unknown 44.0
Olfactory tubercle
nTPM: 52.6
1998 Female, age 91, both hemispheres 58.3
1846 Male, age 80, right hemisphere 54.3
2487 Female, age 94, left hemisphere 49.9
2856 Male, age 75, right hemisphere 47.9
Putamen
nTPM: 46.5
1838 Male, age 80, right hemisphere 55.5
1937 Female, age 91, right hemisphere 53.7
2466 Female, age 79, unknown 49.0
1829 Male, age 74, unknown 45.5
2647 Male, age 75, left hemisphere 41.5
2482 Female, age 94, left hemisphere 41.0
2489 Female, age 72, unknown 39.4
Septal nuclei
nTPM: 49.1
1960 Male, age 74, unknown 56.9
2031 Female, age 72, unknown 56.1
2009 Female, age 91, both hemispheres 52.2
2629 Female, age 94, right hemisphere 47.9
2059 Female, age 85, both hemispheres 46.4
2394 Male, age 61, left hemisphere 44.7
2199 Male, age 80, right hemisphere 39.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 54.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.0
Samples: 246

Max nTPM: 123.9
Min nTPM: 9.9
Std nTPM: 20.4
Median nTPM: 45.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 123.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 98.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 83.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 82.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 82.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 81.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 80.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 80.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 79.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 79.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 79.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 54.1
Samples: 246

Max nTPM: 114.5
Min nTPM: 5.3
Std nTPM: 20.5
Median nTPM: 56.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 114.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 105.1
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 102.5
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 99.0
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 97.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 93.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 91.3
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 89.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 88.9
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 86.2
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 85.4
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Brain - Putamen (basal ganglia)
Average nTPM: 42.0
Samples: 205

Max nTPM: 85.8
Min nTPM: 8.1
Std nTPM: 19.3
Median nTPM: 41.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 85.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 84.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 83.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 83.0
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 81.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 79.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 78.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 78.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 77.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 77.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 75.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 56.6
FF:10164-103B2 76 years, female 56.6
Globus pallidus
Scaled Tags Per Million: 24.7
FF:10175-103C4 60 years, female 29.2
FF:10161-103A8 76 years, female 20.2
Nucleus accumbens
Scaled Tags Per Million: 71.3
FF:10037-101F1 23-56 years, mixed 71.3
Putamen
Scaled Tags Per Million: 65.4
FF:10176-103C5 60 years, female 65.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 86.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 82.8
Samples: 4

Max nTPM: 85.0
Min nTPM: 79.9
Sample A Male 85.0
Sample B Male 83.4
Sample C Female 79.9
Sample D Female 82.8
Septum
nTPM: 84.6
Samples: 4

Max nTPM: 87.2
Min nTPM: 82.1
Sample A Male 84.6
Sample B Male 84.4
Sample C Female 87.2
Sample D Female 82.1
Ventral forebrain
nTPM: 86.9
Samples: 4

Max nTPM: 90.9
Min nTPM: 80.8
Sample A Male 89.4
Sample B Male 80.8
Sample C Female 90.9
Sample D Female 86.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 15.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 15.1
245 Antisense, RP_Baylor_102682, Mouse strain C57BL/6J (56 days, male) 15.1
244 Antisense, RP_Baylor_102682, Mouse strain C57BL/6J (56 days, male) 3.1
Pallidum
Expression energy: 15.2
245 Antisense, RP_Baylor_102682, Mouse strain C57BL/6J (56 days, male) 15.2
244 Antisense, RP_Baylor_102682, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

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