MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:45.3 nTPM
HPA:45.3 nTPM
GTEx:24.8 nTPM
FANTOM5:15.7 Scaled Tags Per Million
Mouse:99.0 nTPM
Allen mouse:14.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.3
2019 Male, age 18, unknown 47.2
1827 Male, age 72, unknown 44.6
2411 Female, age 72, unknown 44.0
2219 Male, age 76, both hemispheres 42.6
2586 Male, age 75, left hemisphere 42.0
2666 Male, age 74, left hemisphere 41.4
1870 Female, age 42, unknown 41.1
2828 Female, age 72, unknown 40.6
1833 Male, age 53, unknown 39.9
1830 Male, age 51, unknown 39.4
Dorsal raphe nucleus
nTPM: 42.0
2298 Female, age 72, unknown 45.8
2047 Male, age 72, unknown 43.1
1828 Male, age 53, unknown 42.2
2750 Male, age 76, both hemispheres 41.1
2016 Female, age 72, unknown 37.9
Inferior colliculus
nTPM: 43.4
2097 Female, age 72, unknown 46.2
1848 Female, age 42, unknown 43.0
1890 Male, age 53, unknown 42.4
2849 Male, age 72, unknown 41.9
Median raphe nucleus
nTPM: 41.2
2220 Male, age 76, midline 41.2
Pedunculopontine tegmental nucleus
nTPM: 41.6
1921 Female, age 85, both hemispheres 44.8
2334 Male, age 80, both hemispheres 41.6
2338 Male, age 61, both hemispheres 38.6
Periaquaductal grey, anterior
nTPM: 41.5
1795 Male, age 51, unknown 43.0
2502 Female, age 75, unknown 41.1
1947 Male, age 18, unknown 40.4
Periaquaductal grey, dorsal
nTPM: 39.9
1840 Male, age 53, unknown 41.7
1831 Male, age 72, unknown 39.8
2464 Female, age 72, unknown 39.8
2850 Male, age 76, both hemispheres 38.4
Periaquaductal grey, lateral
nTPM: 38.9
2272 Male, age 74, both hemispheres 40.9
2053 Male, age 18, unknown 39.0
2140 Male, age 76, both hemispheres 36.8
Pretectal area
nTPM: 45.3
1817 Female, age 42, unknown 52.3
2007 Male, age 72, unknown 51.6
1816 Male, age 51, unknown 49.8
2667 Female, age 75, unknown 49.8
1944 Female, age 72, unknown 48.8
1815 Male, age 53, unknown 45.9
2224 Female, age 72, unknown 42.5
2273 Male, age 74, both hemispheres 40.9
2825 Male, age 18, unknown 39.8
2407 Male, age 75, both hemispheres 39.5
2316 Male, age 76, right hemisphere 37.7
Red nucleus
nTPM: 41.9
2785 Male, age 18, unknown 46.1
1821 Female, age 72, unknown 44.6
2725 Female, age 75, unknown 42.9
2584 Male, age 75, left hemisphere 42.3
1954 Female, age 42, unknown 42.0
2588 Male, age 74, left hemisphere 41.5
2769 Male, age 72, unknown 41.5
1904 Male, age 53, unknown 40.9
2503 Female, age 72, unknown 40.7
2227 Male, age 72, unknown 40.5
1865 Male, age 51, unknown 40.1
2823 Male, age 76, right hemisphere 39.4
Substantia nigra
nTPM: 43.6
1889 Female, age 72, unknown 49.9
1916 Female, age 42, unknown 47.3
1941 Male, age 53, unknown 46.9
1851 Male, age 51, unknown 45.7
2665 Male, age 74, both hemispheres 45.3
2409 Female, age 72, unknown 41.0
2241 Male, age 72, unknown 40.6
2583 Male, age 75, right hemisphere 40.4
2699 Male, age 18, unknown 39.9
2590 Female, age 75, unknown 38.8
Superior colliculus
nTPM: 42.2
2087 Female, age 72, unknown 45.7
1895 Male, age 76, right hemisphere 44.0
1796 Male, age 53, unknown 43.7
2587 Male, age 74, left hemisphere 42.9
2261 Male, age 18, unknown 42.8
2668 Female, age 75, unknown 42.2
1839 Male, age 51, unknown 41.2
2664 Male, age 75, both hemispheres 41.0
1995 Male, age 72, unknown 39.3
1913 Female, age 42, unknown 39.2
Ventral tegmental area
nTPM: 42.7
2410 Female, age 72, unknown 46.9
2218 Male, age 76, both hemispheres 45.2
1915 Female, age 42, unknown 43.8
2223 Female, age 72, unknown 41.0
1942 Male, age 51, unknown 40.7
2021 Male, age 53, unknown 38.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.8
Samples: 139

Max nTPM: 104.0
Min nTPM: 8.8
Std nTPM: 14.1
Median nTPM: 21.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 104.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 76.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 55.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 55.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 50.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 50.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 48.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 48.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 47.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 46.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.7
FF:10158-103A5 76 years, female 15.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.1
Samples: 4

Max nTPM: 106.3
Min nTPM: 93.0
Sample A Male 106.3
Sample B Male 95.5
Sample C Female 93.0
Sample D Female 101.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.8
245 Antisense, RP_Baylor_102682, Mouse strain C57BL/6J (56 days, male) 14.8
244 Antisense, RP_Baylor_102682, Mouse strain C57BL/6J (56 days, male) 4.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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