BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:33.8 nTPM
HPA:33.8 nTPM
GTEx:39.0 nTPM
FANTOM5:41.7 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:49.9 nTPM
Allen mouse:8.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA031621Antibody CAB032539
Glial cells LowNot detected
Neuronal cells MediumLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.0
2846 Female, age 79, unknown 35.2
2290 Female, age 72, unknown 33.8
2481 Female, age 94, left hemisphere 33.8
1857 Female, age 85, left hemisphere 33.7
1854 Male, age 80, left hemisphere 33.3
1781 Male, age 74, unknown 33.2
2288 Male, age 75, left hemisphere 31.2
2289 Male, age 61, right hemisphere 29.7
Claustrum
nTPM: 33.0
2645 Female, age 72, unknown 36.3
2568 Male, age 61, both hemispheres 33.8
2491 Male, age 75, both hemispheres 33.7
2284 Female, age 91, both hemispheres 33.6
1956 Male, age 74, unknown 32.4
2196 Female, age 79, unknown 32.2
2198 Male, age 80, both hemispheres 32.2
2292 Female, age 85, both hemispheres 31.5
2392 Female, age 94, both hemispheres 31.2
Globus pallidus, externus
nTPM: 32.5
1996 Male, age 80, right hemisphere 34.6
2772 Female, age 79, unknown 33.1
2567 Female, age 72, unknown 32.1
2395 Male, age 75, both hemispheres 31.6
2646 Male, age 61, right hemisphere 31.0
Globus pallidus, internus
nTPM: 32.5
2483 Female, age 94, right hemisphere 34.8
2287 Male, age 75, right hemisphere 33.1
2566 Female, age 72, unknown 32.5
2037 Male, age 80, right hemisphere 32.3
2778 Female, age 91, both hemispheres 31.8
1818 Male, age 74, unknown 31.6
2111 Female, age 85, right hemisphere 31.6
Nucleus accumbens
nTPM: 32.5
1783 Male, age 74, unknown 33.8
1856 Female, age 91, right hemisphere 33.8
1806 Female, age 85, left hemisphere 33.6
2824 Male, age 61, right hemisphere 33.0
2286 Male, age 75, left hemisphere 32.3
2732 Male, age 80, right hemisphere 31.3
2391 Female, age 94, left hemisphere 31.1
2698 Female, age 72, unknown 30.9
Nucleus basalis of Meynert
nTPM: 32.3
2393 Male, age 80, right hemisphere 33.5
2569 Male, age 61, both hemispheres 32.8
2484 Female, age 94, left hemisphere 31.5
2821 Male, age 75, both hemispheres 31.4
Nucleus of the diagonal band
nTPM: 33.6
2775 Male, age 80, right hemisphere 36.1
1812 Female, age 91, both hemispheres 34.4
2029 Male, age 61, right hemisphere 33.0
2195 Female, age 85, both hemispheres 32.7
1979 Male, age 74, unknown 31.7
Olfactory tubercle
nTPM: 33.4
1846 Male, age 80, right hemisphere 34.2
1998 Female, age 91, both hemispheres 33.9
2856 Male, age 75, right hemisphere 33.4
2487 Female, age 94, left hemisphere 31.9
Putamen
nTPM: 33.8
2647 Male, age 75, left hemisphere 36.3
2466 Female, age 79, unknown 34.8
1838 Male, age 80, right hemisphere 33.6
1937 Female, age 91, right hemisphere 33.5
2489 Female, age 72, unknown 32.9
2482 Female, age 94, left hemisphere 32.7
1829 Male, age 74, unknown 32.5
Septal nuclei
nTPM: 33.4
2031 Female, age 72, unknown 35.0
1960 Male, age 74, unknown 34.5
2059 Female, age 85, both hemispheres 34.3
2629 Female, age 94, right hemisphere 34.1
2009 Female, age 91, both hemispheres 33.1
2199 Male, age 80, right hemisphere 31.7
2394 Male, age 61, left hemisphere 31.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.8
Samples: 246

Max nTPM: 70.8
Min nTPM: 14.8
Std nTPM: 9.1
Median nTPM: 35.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 70.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 67.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 58.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 56.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 55.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 55.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 54.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 53.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 53.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 52.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 52.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.3
Samples: 246

Max nTPM: 81.2
Min nTPM: 14.0
Std nTPM: 10.6
Median nTPM: 33.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 81.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 70.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 67.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 64.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 60.7
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 60.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 60.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 60.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 55.2
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 55.2
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 55.0
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Brain - Putamen (basal ganglia)
Average nTPM: 39.0
Samples: 205

Max nTPM: 72.2
Min nTPM: 18.9
Std nTPM: 9.5
Median nTPM: 38.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 72.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 66.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 59.9
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 59.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 58.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 57.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 56.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 56.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 56.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 56.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 56.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.7
FF:10164-103B2 76 years, female 41.7
Globus pallidus
Scaled Tags Per Million: 22.7
FF:10161-103A8 76 years, female 28.1
FF:10175-103C4 60 years, female 17.3
Nucleus accumbens
Scaled Tags Per Million: 36.7
FF:10037-101F1 23-56 years, mixed 36.7
Putamen
Scaled Tags Per Million: 39.8
FF:10176-103C5 60 years, female 39.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Caudate
nTPM: 15.6
Samples: 4

Max nTPM: 18.8
Min nTPM: 11.9
Sample A Female 11.9
Sample B Female 17.1
Sample C Male 18.8
Sample D Male 14.6
Putamen
nTPM: 15.8
Samples: 4

Max nTPM: 19.2
Min nTPM: 13.0
Sample A Female 13.0
Sample B Female 13.7
Sample C Male 17.3
Sample D Male 19.2
Septum
nTPM: 13.4
Samples: 4

Max nTPM: 14.0
Min nTPM: 13.0
Sample A Female 13.2
Sample B Female 13.0
Sample C Male 13.3
Sample D Male 14.0
Ventral pallidum
nTPM: 13.8
Samples: 4

Max nTPM: 16.4
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 14.9
Sample C Male 16.4
Sample D Male 14.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 49.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 49.9
Samples: 4

Max nTPM: 54.9
Min nTPM: 46.8
Sample A Male 46.8
Sample B Male 54.9
Sample C Female 47.5
Sample D Female 50.5
Septum
nTPM: 38.7
Samples: 4

Max nTPM: 41.6
Min nTPM: 34.1
Sample A Male 41.6
Sample B Male 40.2
Sample C Female 38.8
Sample D Female 34.1
Ventral forebrain
nTPM: 48.0
Samples: 4

Max nTPM: 56.7
Min nTPM: 42.8
Sample A Male 47.5
Sample B Male 42.8
Sample C Female 56.7
Sample D Female 45.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.1
71610819 Antisense, RP_050927_01_H07, Mouse strain C57BL/6J (56 days, male) 8.1
Pallidum
Expression energy: 6.9
71610819 Antisense, RP_050927_01_H07, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

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