MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:370.7 nTPM
HPA:370.7 nTPM
GTEx:297.9 nTPM
FANTOM5:91.6 Scaled Tags Per Million
Pig:378.3 nTPM
Mouse:430.7 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 370.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.7
2219 Male, age 76, both hemispheres 344.3
2828 Female, age 72, unknown 93.2
2586 Male, age 75, left hemisphere 83.8
2666 Male, age 74, left hemisphere 78.4
1833 Male, age 53, unknown 67.8
2411 Female, age 72, unknown 66.2
1827 Male, age 72, unknown 62.0
1830 Male, age 51, unknown 59.6
1870 Female, age 42, unknown 57.8
2019 Male, age 18, unknown 54.0
Dorsal raphe nucleus
nTPM: 71.3
2016 Female, age 72, unknown 83.1
1828 Male, age 53, unknown 73.6
2047 Male, age 72, unknown 67.1
2750 Male, age 76, both hemispheres 67.1
2298 Female, age 72, unknown 65.5
Inferior colliculus
nTPM: 73.0
1890 Male, age 53, unknown 80.8
2097 Female, age 72, unknown 73.7
1848 Female, age 42, unknown 71.3
2849 Male, age 72, unknown 66.3
Median raphe nucleus
nTPM: 57.2
2220 Male, age 76, midline 57.2
Pedunculopontine tegmental nucleus
nTPM: 64.2
1921 Female, age 85, both hemispheres 82.7
2334 Male, age 80, both hemispheres 59.4
2338 Male, age 61, both hemispheres 50.6
Periaquaductal grey, anterior
nTPM: 59.9
2502 Female, age 75, unknown 71.8
1947 Male, age 18, unknown 55.8
1795 Male, age 51, unknown 52.3
Periaquaductal grey, dorsal
nTPM: 69.0
1840 Male, age 53, unknown 81.6
2464 Female, age 72, unknown 70.9
2850 Male, age 76, both hemispheres 64.8
1831 Male, age 72, unknown 58.6
Periaquaductal grey, lateral
nTPM: 56.3
2053 Male, age 18, unknown 59.8
2140 Male, age 76, both hemispheres 57.9
2272 Male, age 74, both hemispheres 51.1
Pretectal area
nTPM: 61.6
1815 Male, age 53, unknown 73.6
2667 Female, age 75, unknown 73.4
1944 Female, age 72, unknown 71.0
1817 Female, age 42, unknown 65.8
2316 Male, age 76, right hemisphere 61.5
2825 Male, age 18, unknown 61.1
1816 Male, age 51, unknown 58.5
2007 Male, age 72, unknown 56.9
2407 Male, age 75, both hemispheres 55.0
2273 Male, age 74, both hemispheres 50.7
2224 Female, age 72, unknown 50.3
Red nucleus
nTPM: 72.1
2503 Female, age 72, unknown 86.0
2725 Female, age 75, unknown 84.3
1821 Female, age 72, unknown 83.1
2823 Male, age 76, right hemisphere 82.5
2769 Male, age 72, unknown 73.0
2227 Male, age 72, unknown 71.7
1904 Male, age 53, unknown 71.4
2588 Male, age 74, left hemisphere 68.5
1954 Female, age 42, unknown 65.5
2584 Male, age 75, left hemisphere 63.8
1865 Male, age 51, unknown 63.6
2785 Male, age 18, unknown 51.2
Substantia nigra
nTPM: 370.7
2699 Male, age 18, unknown 1038.9
1916 Female, age 42, unknown 767.0
1941 Male, age 53, unknown 458.2
2241 Male, age 72, unknown 457.7
1851 Male, age 51, unknown 415.5
2409 Female, age 72, unknown 227.7
1889 Female, age 72, unknown 107.0
2665 Male, age 74, both hemispheres 85.1
2590 Female, age 75, unknown 76.2
2583 Male, age 75, right hemisphere 74.1
Superior colliculus
nTPM: 67.6
2668 Female, age 75, unknown 87.1
2087 Female, age 72, unknown 75.8
1995 Male, age 72, unknown 74.1
1913 Female, age 42, unknown 67.5
1796 Male, age 53, unknown 66.2
2587 Male, age 74, left hemisphere 65.4
2664 Male, age 75, both hemispheres 64.4
1895 Male, age 76, right hemisphere 62.2
1839 Male, age 51, unknown 57.9
2261 Male, age 18, unknown 55.5
Ventral tegmental area
nTPM: 287.0
2218 Male, age 76, both hemispheres 536.8
1915 Female, age 42, unknown 446.1
1942 Male, age 51, unknown 336.4
2410 Female, age 72, unknown 256.9
2223 Female, age 72, unknown 76.2
2021 Male, age 53, unknown 69.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 297.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 297.9
Samples: 139

Max nTPM: 1393.2
Min nTPM: 18.0
Std nTPM: 272.9
Median nTPM: 209.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1393.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1338.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1122.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1072.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 1058.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 1008.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 978.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 938.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 935.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 875.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 801.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.6
FF:10158-103A5 76 years, female 91.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 378.3
Pig sample Sample description nTPM
Midbrain
nTPM: 58.9
Samples: 4

Max nTPM: 158.6
Min nTPM: 19.4
Sample A Female 35.9
Sample B Female 158.6
Sample C Male 19.4
Sample D Male 21.8
Periaqueductal gray
nTPM: 61.4
Samples: 3

Max nTPM: 75.7
Min nTPM: 42.1
Sample B Female 66.4
Sample C Male 42.1
Sample D Male 75.7
Substantia nigra
nTPM: 378.4
Samples: 4

Max nTPM: 652.8
Min nTPM: 24.4
Sample A Female 493.2
Sample B Female 343.0
Sample C Male 652.8
Sample D Male 24.4
Superior colliculi
nTPM: 27.3
Samples: 4

Max nTPM: 51.9
Min nTPM: 12.4
Sample A Female 22.4
Sample B Female 51.9
Sample C Male 12.4
Sample D Male 22.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 430.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 430.7
Samples: 4

Max nTPM: 446.5
Min nTPM: 420.1
Sample A Male 422.5
Sample B Male 420.1
Sample C Female 446.5
Sample D Female 433.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
72103809 Antisense, RP_051017_03_D07, Mouse strain C57BL/6J (56 days, male) 1.0
69013627 Antisense, RP_050309_02_F10, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.