MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2.9 nTPM
HPA:2.9 nTPM
GTEx:8.6 nTPM
FANTOM5:23.9 Scaled Tags Per Million
Pig:51.3 nTPM
Mouse:7.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.9
2586 Male, age 75, left hemisphere 3.8
2019 Male, age 18, unknown 2.8
2411 Female, age 72, unknown 2.6
1830 Male, age 51, unknown 2.1
1827 Male, age 72, unknown 2.0
1870 Female, age 42, unknown 2.0
2828 Female, age 72, unknown 1.9
1833 Male, age 53, unknown 1.6
2666 Male, age 74, left hemisphere 0.5
2219 Male, age 76, both hemispheres 0.2
Dorsal raphe nucleus
nTPM: 2.4
1828 Male, age 53, unknown 3.2
2298 Female, age 72, unknown 3.0
2047 Male, age 72, unknown 2.4
2750 Male, age 76, both hemispheres 2.3
2016 Female, age 72, unknown 1.2
Inferior colliculus
nTPM: 1.5
2097 Female, age 72, unknown 1.9
1848 Female, age 42, unknown 1.5
1890 Male, age 53, unknown 1.4
2849 Male, age 72, unknown 1.2
Median raphe nucleus
nTPM: 1.8
2220 Male, age 76, midline 1.8
Pedunculopontine tegmental nucleus
nTPM: 2.1
2334 Male, age 80, both hemispheres 2.8
1921 Female, age 85, both hemispheres 1.8
2338 Male, age 61, both hemispheres 1.7
Periaquaductal grey, anterior
nTPM: 1.2
1795 Male, age 51, unknown 2.7
1947 Male, age 18, unknown 0.6
2502 Female, age 75, unknown 0.4
Periaquaductal grey, dorsal
nTPM: 1.5
2850 Male, age 76, both hemispheres 2.5
1831 Male, age 72, unknown 1.6
1840 Male, age 53, unknown 1.1
2464 Female, age 72, unknown 0.9
Periaquaductal grey, lateral
nTPM: 1.4
2140 Male, age 76, both hemispheres 2.1
2272 Male, age 74, both hemispheres 1.2
2053 Male, age 18, unknown 0.8
Pretectal area
nTPM: 2.1
2007 Male, age 72, unknown 3.9
1817 Female, age 42, unknown 2.7
2224 Female, age 72, unknown 2.2
2273 Male, age 74, both hemispheres 2.2
2667 Female, age 75, unknown 2.1
1944 Female, age 72, unknown 2.0
2316 Male, age 76, right hemisphere 2.0
2825 Male, age 18, unknown 1.6
1815 Male, age 53, unknown 1.5
2407 Male, age 75, both hemispheres 1.5
1816 Male, age 51, unknown 1.3
Red nucleus
nTPM: 2.9
1821 Female, age 72, unknown 3.7
1904 Male, age 53, unknown 3.3
2785 Male, age 18, unknown 3.3
2725 Female, age 75, unknown 3.2
2503 Female, age 72, unknown 3.1
1954 Female, age 42, unknown 2.9
1865 Male, age 51, unknown 2.8
2227 Male, age 72, unknown 2.8
2588 Male, age 74, left hemisphere 2.6
2584 Male, age 75, left hemisphere 2.4
2769 Male, age 72, unknown 2.3
2823 Male, age 76, right hemisphere 2.0
Substantia nigra
nTPM: 1.5
1941 Male, age 53, unknown 2.7
1889 Female, age 72, unknown 2.6
1916 Female, age 42, unknown 2.1
2699 Male, age 18, unknown 1.7
1851 Male, age 51, unknown 1.5
2590 Female, age 75, unknown 1.5
2665 Male, age 74, both hemispheres 1.5
2583 Male, age 75, right hemisphere 1.3
2241 Male, age 72, unknown 0.5
2409 Female, age 72, unknown 0.0
Superior colliculus
nTPM: 1.8
2587 Male, age 74, left hemisphere 3.0
2668 Female, age 75, unknown 2.3
1995 Male, age 72, unknown 2.0
2087 Female, age 72, unknown 2.0
2261 Male, age 18, unknown 2.0
2664 Male, age 75, both hemispheres 1.8
1895 Male, age 76, right hemisphere 1.5
1796 Male, age 53, unknown 1.2
1839 Male, age 51, unknown 1.2
1913 Female, age 42, unknown 1.2
Ventral tegmental area
nTPM: 2.0
1915 Female, age 42, unknown 2.4
2218 Male, age 76, both hemispheres 2.4
2223 Female, age 72, unknown 2.4
2410 Female, age 72, unknown 1.6
2021 Male, age 53, unknown 1.5
1942 Male, age 51, unknown 1.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.6
Samples: 139

Max nTPM: 21.1
Min nTPM: 0.9
Std nTPM: 3.8
Median nTPM: 7.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 18.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 17.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 17.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 16.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 16.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 15.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 15.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 15.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 15.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.9
FF:10158-103A5 76 years, female 23.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.3
Pig sample Sample description nTPM
Midbrain
nTPM: 51.3
Samples: 4

Max nTPM: 90.1
Min nTPM: 32.7
Sample A Female 90.1
Sample B Female 45.2
Sample C Male 32.7
Sample D Male 37.1
Periaqueductal gray
nTPM: 36.3
Samples: 3

Max nTPM: 39.7
Min nTPM: 33.1
Sample B Female 36.0
Sample C Male 39.7
Sample D Male 33.1
Substantia nigra
nTPM: 48.9
Samples: 4

Max nTPM: 57.4
Min nTPM: 34.9
Sample A Female 57.4
Sample B Female 34.9
Sample C Male 47.8
Sample D Male 55.3
Superior colliculi
nTPM: 42.1
Samples: 4

Max nTPM: 52.2
Min nTPM: 30.7
Sample A Female 52.2
Sample B Female 30.7
Sample C Male 41.8
Sample D Male 43.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.1
Sample A Male 8.1
Sample B Male 7.5
Sample C Female 6.1
Sample D Female 6.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
74357561 Antisense, RP_051214_01_B12, Mouse strain C57BL/6J (56 days, male) 0.1
69013173 Antisense, RP_050309_02_B04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.