BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.6 nTPM
HPA:13.6 nTPM
GTEx:14.2 nTPM
FANTOM5:91.1 Scaled Tags Per Million
Mouse:79.5 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.1
1781 Male, age 74, unknown 12.6
1854 Male, age 80, left hemisphere 12.6
2846 Female, age 79, unknown 12.5
1857 Female, age 85, left hemisphere 12.4
2290 Female, age 72, unknown 12.2
2481 Female, age 94, left hemisphere 11.9
2288 Male, age 75, left hemisphere 11.4
2289 Male, age 61, right hemisphere 10.9
Claustrum
nTPM: 11.7
2392 Female, age 94, both hemispheres 12.6
1956 Male, age 74, unknown 12.4
2292 Female, age 85, both hemispheres 12.1
2196 Female, age 79, unknown 11.8
2198 Male, age 80, both hemispheres 11.8
2491 Male, age 75, both hemispheres 11.5
2284 Female, age 91, both hemispheres 11.3
2568 Male, age 61, both hemispheres 11.0
2645 Female, age 72, unknown 11.0
Globus pallidus, externus
nTPM: 13.5
1996 Male, age 80, right hemisphere 15.1
2772 Female, age 79, unknown 13.6
2395 Male, age 75, both hemispheres 13.5
2646 Male, age 61, right hemisphere 12.9
2567 Female, age 72, unknown 12.3
Globus pallidus, internus
nTPM: 13.6
2111 Female, age 85, right hemisphere 14.7
2287 Male, age 75, right hemisphere 14.7
2778 Female, age 91, both hemispheres 14.0
2037 Male, age 80, right hemisphere 13.6
2483 Female, age 94, right hemisphere 13.1
1818 Male, age 74, unknown 13.0
2566 Female, age 72, unknown 12.1
Nucleus accumbens
nTPM: 12.7
2732 Male, age 80, right hemisphere 15.1
1806 Female, age 85, left hemisphere 13.5
1856 Female, age 91, right hemisphere 12.5
2824 Male, age 61, right hemisphere 12.5
2391 Female, age 94, left hemisphere 12.4
2698 Female, age 72, unknown 12.1
2286 Male, age 75, left hemisphere 11.9
1783 Male, age 74, unknown 11.7
Nucleus basalis of Meynert
nTPM: 11.8
2569 Male, age 61, both hemispheres 12.7
2393 Male, age 80, right hemisphere 12.5
2821 Male, age 75, both hemispheres 11.3
2484 Female, age 94, left hemisphere 10.8
Nucleus of the diagonal band
nTPM: 11.7
1812 Female, age 91, both hemispheres 12.8
1979 Male, age 74, unknown 11.6
2195 Female, age 85, both hemispheres 11.6
2029 Male, age 61, right hemisphere 11.5
2775 Male, age 80, right hemisphere 11.0
Olfactory tubercle
nTPM: 12.1
1846 Male, age 80, right hemisphere 12.7
2487 Female, age 94, left hemisphere 12.6
2856 Male, age 75, right hemisphere 12.2
1998 Female, age 91, both hemispheres 11.1
Putamen
nTPM: 11.8
1829 Male, age 74, unknown 12.2
1937 Female, age 91, right hemisphere 12.2
2466 Female, age 79, unknown 11.9
1838 Male, age 80, right hemisphere 11.8
2482 Female, age 94, left hemisphere 11.7
2489 Female, age 72, unknown 11.6
2647 Male, age 75, left hemisphere 11.2
Septal nuclei
nTPM: 12.1
2199 Male, age 80, right hemisphere 13.3
2394 Male, age 61, left hemisphere 13.2
2009 Female, age 91, both hemispheres 12.4
2031 Female, age 72, unknown 12.3
2629 Female, age 94, right hemisphere 11.7
1960 Male, age 74, unknown 11.2
2059 Female, age 85, both hemispheres 10.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.8
Samples: 246

Max nTPM: 23.7
Min nTPM: 6.9
Std nTPM: 3.0
Median nTPM: 12.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 23.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 23.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 23.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 21.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 20.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 20.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 20.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 20.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 19.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 19.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 19.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.2
Samples: 246

Max nTPM: 43.3
Min nTPM: 7.0
Std nTPM: 5.0
Median nTPM: 12.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 43.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 36.8
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 36.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 32.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 31.1
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 31.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 30.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 28.3
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 25.2
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 24.8
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 24.7
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Brain - Putamen (basal ganglia)
Average nTPM: 13.5
Samples: 205

Max nTPM: 30.4
Min nTPM: 7.2
Std nTPM: 3.4
Median nTPM: 12.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 30.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 29.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 24.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 22.6
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 22.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 21.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 21.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 21.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 20.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 20.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 19.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.1
FF:10164-103B2 76 years, female 45.1
Globus pallidus
Scaled Tags Per Million: 91.1
FF:10175-103C4 60 years, female 110.5
FF:10161-103A8 76 years, female 71.7
Nucleus accumbens
Scaled Tags Per Million: 35.9
FF:10037-101F1 23-56 years, mixed 35.9
Putamen
Scaled Tags Per Million: 31.0
FF:10176-103C5 60 years, female 31.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 79.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 75.4
Samples: 4

Max nTPM: 78.7
Min nTPM: 72.6
Sample A Male 74.6
Sample B Male 72.6
Sample C Female 75.8
Sample D Female 78.7
Septum
nTPM: 79.5
Samples: 4

Max nTPM: 89.2
Min nTPM: 59.3
Sample A Male 59.3
Sample B Male 89.2
Sample C Female 82.9
Sample D Female 86.5
Ventral forebrain
nTPM: 61.0
Samples: 4

Max nTPM: 69.6
Min nTPM: 55.6
Sample A Male 57.5
Sample B Male 61.4
Sample C Female 69.6
Sample D Female 55.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
74003413 Antisense, RP_051017_01_C02, Mouse strain C57BL/6J (56 days, male) 0.3
72081396 Antisense, RP_051017_01_C02, Mouse strain C57BL/6J (56 days, male) 0.3
80341208 Antisense, RP_071018_02_B08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
74003413 Antisense, RP_051017_01_C02, Mouse strain C57BL/6J (56 days, male) 0.2
72081396 Antisense, RP_051017_01_C02, Mouse strain C57BL/6J (56 days, male) 0.2
80341208 Antisense, RP_071018_02_B08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas project is funded
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