MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:145.8 nTPM
HPA:145.8 nTPM
GTEx:117.6 nTPM
FANTOM5:252.1 Scaled Tags Per Million
Pig:80.9 nTPM
Mouse:16.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 145.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.7
2586 Male, age 75, left hemisphere 156.2
1830 Male, age 51, unknown 131.2
1833 Male, age 53, unknown 126.9
2828 Female, age 72, unknown 124.9
2019 Male, age 18, unknown 124.5
2666 Male, age 74, left hemisphere 124.2
2411 Female, age 72, unknown 120.4
1870 Female, age 42, unknown 117.8
1827 Male, age 72, unknown 97.9
2219 Male, age 76, both hemispheres 93.1
Dorsal raphe nucleus
nTPM: 92.4
2750 Male, age 76, both hemispheres 117.5
2016 Female, age 72, unknown 103.2
1828 Male, age 53, unknown 96.2
2047 Male, age 72, unknown 76.8
2298 Female, age 72, unknown 68.1
Inferior colliculus
nTPM: 92.2
1890 Male, age 53, unknown 101.2
2849 Male, age 72, unknown 97.3
1848 Female, age 42, unknown 95.6
2097 Female, age 72, unknown 74.8
Median raphe nucleus
nTPM: 79.5
2220 Male, age 76, midline 79.5
Pedunculopontine tegmental nucleus
nTPM: 95.5
2334 Male, age 80, both hemispheres 102.1
2338 Male, age 61, both hemispheres 94.9
1921 Female, age 85, both hemispheres 89.6
Periaquaductal grey, anterior
nTPM: 90.2
2502 Female, age 75, unknown 104.7
1947 Male, age 18, unknown 83.5
1795 Male, age 51, unknown 82.3
Periaquaductal grey, dorsal
nTPM: 82.1
2464 Female, age 72, unknown 98.6
1831 Male, age 72, unknown 83.6
2850 Male, age 76, both hemispheres 76.5
1840 Male, age 53, unknown 69.7
Periaquaductal grey, lateral
nTPM: 81.4
2053 Male, age 18, unknown 88.7
2140 Male, age 76, both hemispheres 79.8
2272 Male, age 74, both hemispheres 75.6
Pretectal area
nTPM: 89.8
2316 Male, age 76, right hemisphere 112.6
1815 Male, age 53, unknown 110.0
2407 Male, age 75, both hemispheres 109.1
1817 Female, age 42, unknown 96.1
2825 Male, age 18, unknown 94.1
2007 Male, age 72, unknown 92.4
2667 Female, age 75, unknown 84.3
1816 Male, age 51, unknown 74.4
1944 Female, age 72, unknown 73.4
2224 Female, age 72, unknown 72.6
2273 Male, age 74, both hemispheres 69.2
Red nucleus
nTPM: 145.8
2823 Male, age 76, right hemisphere 159.0
1904 Male, age 53, unknown 158.5
2769 Male, age 72, unknown 157.6
1865 Male, age 51, unknown 155.0
2588 Male, age 74, left hemisphere 154.5
2227 Male, age 72, unknown 153.3
2503 Female, age 72, unknown 152.5
1954 Female, age 42, unknown 141.3
2785 Male, age 18, unknown 140.8
1821 Female, age 72, unknown 140.3
2584 Male, age 75, left hemisphere 124.4
2725 Female, age 75, unknown 112.3
Substantia nigra
nTPM: 101.2
2699 Male, age 18, unknown 116.0
2583 Male, age 75, right hemisphere 112.3
2665 Male, age 74, both hemispheres 112.0
2409 Female, age 72, unknown 106.9
2590 Female, age 75, unknown 106.6
1851 Male, age 51, unknown 106.2
1889 Female, age 72, unknown 94.1
2241 Male, age 72, unknown 91.0
1916 Female, age 42, unknown 83.6
1941 Male, age 53, unknown 83.2
Superior colliculus
nTPM: 106.9
1995 Male, age 72, unknown 129.0
1913 Female, age 42, unknown 122.7
2664 Male, age 75, both hemispheres 116.3
2668 Female, age 75, unknown 111.8
1839 Male, age 51, unknown 111.7
1895 Male, age 76, right hemisphere 111.0
2587 Male, age 74, left hemisphere 107.9
1796 Male, age 53, unknown 93.9
2261 Male, age 18, unknown 83.1
2087 Female, age 72, unknown 82.2
Ventral tegmental area
nTPM: 101.4
2223 Female, age 72, unknown 114.7
2410 Female, age 72, unknown 109.1
1942 Male, age 51, unknown 102.6
2021 Male, age 53, unknown 96.1
1915 Female, age 42, unknown 94.7
2218 Male, age 76, both hemispheres 91.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 117.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 117.6
Samples: 139

Max nTPM: 270.8
Min nTPM: 36.9
Std nTPM: 48.3
Median nTPM: 111.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 270.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 263.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 237.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 230.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 218.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 215.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 213.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 213.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 210.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 205.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 202.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 252.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 252.1
FF:10158-103A5 76 years, female 252.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.9
Pig sample Sample description nTPM
Midbrain
nTPM: 75.1
Samples: 4

Max nTPM: 113.0
Min nTPM: 51.6
Sample A Female 113.0
Sample B Female 80.7
Sample C Male 51.6
Sample D Male 54.9
Periaqueductal gray
nTPM: 54.9
Samples: 3

Max nTPM: 66.6
Min nTPM: 46.5
Sample B Female 66.6
Sample C Male 46.5
Sample D Male 51.5
Substantia nigra
nTPM: 80.9
Samples: 4

Max nTPM: 109.4
Min nTPM: 69.2
Sample A Female 73.8
Sample B Female 69.2
Sample C Male 71.1
Sample D Male 109.4
Superior colliculi
nTPM: 67.3
Samples: 4

Max nTPM: 76.6
Min nTPM: 56.3
Sample A Female 71.8
Sample B Female 56.3
Sample C Male 64.6
Sample D Male 76.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 18.3
Min nTPM: 15.0
Sample A Male 18.3
Sample B Male 16.0
Sample C Female 15.0
Sample D Female 15.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69202490 Antisense, RP_050324_03_G04, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.